Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1398 ATGGGAAGGACTCCTTGCTGCAGTCACGAGGAATTGAGAAAAGGGGCATGGACGGTTCAAGAAGACCAGAAACTAATTACTTACATTCAGAAACATGGCACAGGAAGCTGGCGTACCTTGCCACAGAAAGCAGGTCTTAAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTTAGACCTGACATTAAGAGAGGGAAATTAAGCCAAGAAGAAGAGCAGACAATTATCAAACTTCGGGCGGTTCTTGGAAACAGGTGGTCAAGTATTGCAAAGCACTTACCCATGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAAGCAGTTCGAAAAGAATGCTGTGGATCCCTCAAGTTCAAAACCAAATAGCACTGATAGTTCCTCAGAATCAAAATCTAATGACACGTGCATGGTTCCATCAGAGAAAACTGATTGCCATGAACCAAACACCAGCCAATCTCATCAGCACAACTTATCAAGGTCAATCTCATCATCAACTCATCTTCTTAACAAAGTTGCTAGTAAAATTCTGGCATCAGGGTACCTAGAACTAATCAAATCATGCCAACCTGTTGTTGCTGGGAACAGCAAAAGTGAAAGTGTGGTTAAAACTGGTATTGGGTTAGAAAGTGACAATATTAGAGACCCCCTTGAGCCTAATTTGACCTCACCAAGTCATTCTATAACTTCTGCTAAGTTACTGAACAAGATGGCTACTTCCCTCCCTCATAAAGTTCATGGCCTTGAAGCTGCAAAAGCTGTGTTCTCAAAACTGATGGAAAACAGTGAAAAAGGTGCCACTGCTAGTGATGATAGCTTTGTTGGAGGTTGTTTAAATGCTTTAAGCCCTTTTGAGGATAAACCACACATAACAAAAACAATTGACTCCCCTTCTGGTCCTACACTAATGTTCAACCATGTTACCACACCCTCATGCTTTTCAGAAGATAATGAAGATAACTGGCAATGCGTTTCATCTAACTATGTTTCCTTCAAAATTTGTGCTGCGAATGGTGGTGACTGCAGTGTCTCTGAGATCAACTTGGGTGAGTCTTCCAGTTCCACATCCAGCTTCCTGTTTGAGAATGCTGACCTTGGAACGTGTGATGATGAGATAAGCAAGTACATCCAGTATTTGTAG 1161 0.416 MGRTPCCSHEELRKGAWTVQEDQKLITYIQKHGTGSWRTLPQKAGLKRCGKSCRLRWFNYLRPDIKRGKLSQEEEQTIIKLRAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKKQFEKNAVDPSSSKPNSTDSSSESKSNDTCMVPSEKTDCHEPNTSQSHQHNLSRSISSSTHLLNKVASKILASGYLELIKSCQPVVAGNSKSESVVKTGIGLESDNIRDPLEPNLTSPSHSITSAKLLNKMATSLPHKVHGLEAAKAVFSKLMENSEKGATASDDSFVGGCLNALSPFEDKPHITKTIDSPSGPTLMFNHVTTPSCFSEDNEDNWQCVSSNYVSFKICAANGGDCSVSEINLGESSSSTSSFLFENADLGTCDDEISKYIQYL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1398 386 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso4g1398 386 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso4g1398 386 SMART sant 13 63 IPR001005 -
Gso4g1398 386 SMART sant 66 114 IPR001005 -
Gso4g1398 386 CDD SANT 16 61 IPR001005 -
Gso4g1398 386 Gene3D - 69 144 - -
Gso4g1398 386 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso4g1398 386 PANTHER TRANSCRIPTION FACTOR MYB51 1 248 - -
Gso4g1398 386 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso4g1398 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso4g1398 386 Gene3D - 14 66 - -
Gso4g1398 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso4g1398 386 CDD SANT 71 112 IPR001005 -
Gso4g1398 386 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso4g1398 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Gso4g1398 386 MobiDBLite consensus disorder prediction 119 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1398 Gso-Chr4 41226881 41229413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1398 1 145 MYB Transcription Factor Family AT5G15310 64.384 6.10e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso4g1398 Myb_DNA-binding 8.7e-15 CL0123