Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1394 ATGAGGGGTGGGAGGAGGGGTAAGATAAAGCTTCAGTTTAGCAAGATCTACTCATTTGCTTGTGGTAAAACAATCTTCAAGAGGGAACATTCAAAGATTGGGGGACATGGTCATTCCAGGGTGGTTTTCTGCAATGAACCAGATAGATTTGAGGGAGGGATTTTCAATTATGCTGATAATTCTGTTAGGTCCACAAAGTATACTGTTGCCACTTTCTTGCCCAAGTCACTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTCTACTTCTTGGTGGCTGGCATCTTGGCCTTCACAAAGCTTACTCCTTATACTGCCGTCAGTGCTATCCTACCTCTGTCTATCATCATCGGGGCAACTATGGTGAAAGAGGGTATTGAAGATTGGCGCAGGAAAAAGCAGGACATCGAGGTGAACAATAGAAGAGTTAAGTTGCATGAAGGTGATGGCATTTTCAAATATACTGAATGGAAGAATCTGAGAGTAGGGAATATAGTAAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCCTACTGATTTCCTCCAGTTATGAGGATGCAGTTTGCTATGTTGAGACCATGAACTTGGATGGTGAGACAAACTTGAAGATAAAACAAGGGCTGGATGTAACTTCTTCCTTACAGGAGGACTTCAAATTCCATGATTATAGAGCCGTCATCAAATGTGAAGACCCAAATGCAAATTTGTATTCATTTGTTGGGAGCATGGAGTTTGGAGAGCAAAAATATCCTCTTTCTGCCCAACAACTTCTTCTGAGAGACTCTAAGCTTCGTAATACAGACTATGTGTTTGGAGCAGTCATCTTTACTGGTCATGACACAAAGGTTATCCAAAACTCCACTGATCCCCCTTCAAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATATACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTCTCTTTGGCATTGCAACCAAAGGTGACCTTGACAATGGGTTAATGAAAAGATGGTATCTAAGACCAGATAGTTCCACAATTTTTTTTGATCCAAAAAGAGCAGCTGCAGCTGCTATATTTCATTTTTTAACAGCCTTGATGTTGTACAACTTCTTCATTCCTATCTCCTTGTATTTCTCAATAGAGATGGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCACATGTACTATGAAGAAGCTGACAAACCAGCCATTGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGATACAATACTTTCCGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGCTGGGGTAGCTTATGGCCGTGGTGTGACAGAGGTCGAGCAAGCCATGGGTAGAAGTAATGGTTCACCTATTTTTCATGAGCATATTAATGGATTAGAATCAAAATCAAATGAAATCAGGGACTCTCTTGATAGAAAAGAACCTATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTTATGCAGATGTTATACAGAAATTTTTCCGCTTATTGGCAATTTGTCATACTGCCATACCAGAAGTGGATGAAGAAACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTAATTGCTGCAAGAGAAGTTGGTTTTAAATTCTACAAAAGGACTCAGACTTGTTTGTCAATATATGAGTTGGATCCAGTTTCTGGCAATGAAGTTGAAAGGACATACAAGCTTCTTAATGTTATAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAAAATTTTTCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCAAACAATGGGAGGAAGTTTGAAGGGAAAACTGTGGAACATGTGCGTGAATATGCTGACACAGGTCTAAGGACCCTAGTACTTGCCTATTGCGAACTTGATGAACAAGAATACAAGGAGTTCGATGATAAATTTTCTGAAGTAAAAAATTCTGTCGTCGCAGATCAGGAAACTCTGATTGAAGAAGTATCGGATAAGATTGAGAGGAATCTAATCCTTCTGGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATCGACAAGCTTGCCCAAGCTAAGATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTCGCTTGCTTAGACAAGGAATGAAACAGATTATAATTCATTTGGAGATTCCAGATATTCAAGCATTAGAAAAGGTTGGAGACAAGATGGCTATTGCCAAGGCATCAAGGGAAAGTGTGCATCATCAGATATCTGAAGCTGCTCAACTGCTTTCAGCATCCAGAGGGACCTGCCAGACATCTGCTCTGATAATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATATGAAGAACATGTTTCTAGAGCTTGCAAGTCATTGTGCGTCTGTTATCTGCTGTCGCTCATCGCCAAAGCAGAAGGCTCTGGTTACTAGACTGGTCAAATATGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATGTAGGGATTGGAATCAGTGGTGTCGAAGGAATGCAGGCCGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCCGGACAGCCTGCATATAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCATCACTTCCTGTGATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGTCTGAAGTTTCCTATTCTATACCAAGAAGGTGTGCAAAATGTCCTCTTTAGCTGGCGTCTGATACTTAGCTGGATGCTTAATGGATTTATTAGTGCCACAATGATATTCTTCTTCTGCACAAAAGCGATTGAGCCACAGGCCTTTAATGAGGAGGGAAGAACTGCTGGAAGGGATATGCTGGCCGTGACGATGTACACTTGTGTGGTCTGGGTTGTGAACTTGCAGATGGCGCTTGCTATACGTTACTTCACCTTGATAAAACATATTTTCATCTGGGGTTCCATTGCTTACTGGTATCTTTTCCTCATGGTATATGGAGCAATGCCTCCAAACATTTCCACAAATGTTTACAAAGTCTTCATCGAAACTCTTGCCCCGTCTCCTTCCTTTTGGATTGTGACATTCTTTGTGGCGATCTCAACTCTCATACCATACGTCTCATGCTCAGTAATTCAGATGTGGTTCTTCCCCATGTATCACCAAATGGTTCAGTGGATAAGGTATGAGAGGAAGACAAATGGTCCTGAATAA 3501 0.4053 MRGGRRGKIKLQFSKIYSFACGKTIFKREHSKIGGHGHSRVVFCNEPDRFEGGIFNYADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLTPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVKLHEGDGIFKYTEWKNLRVGNIVKIMKDEFFPADLLLISSSYEDAVCYVETMNLDGETNLKIKQGLDVTSSLQEDFKFHDYRAVIKCEDPNANLYSFVGSMEFGEQKYPLSAQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNSTDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSILFGIATKGDLDNGLMKRWYLRPDSSTIFFDPKRAAAAAIFHFLTALMLYNFFIPISLYFSIEMVKVLQSIFINQDIHMYYEEADKPAIARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGVTEVEQAMGRSNGSPIFHEHINGLESKSNEIRDSLDRKEPIKGFNFTDERIMNGNWVNEPYADVIQKFFRLLAICHTAIPEVDEETGNVSYEAESPDEAAFVIAAREVGFKFYKRTQTCLSIYELDPVSGNEVERTYKLLNVIEFNSSRKRMSVIVKDEEGKIFLLCKGADSVMFERLANNGRKFEGKTVEHVREYADTGLRTLVLAYCELDEQEYKEFDDKFSEVKNSVVADQETLIEEVSDKIERNLILLGATAVEDKLQNGVPDCIDKLAQAKIKIWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLEIPDIQALEKVGDKMAIAKASRESVHHQISEAAQLLSASRGTCQTSALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKYGTGKTTLAIGDGANDVGMLQEADVGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKFPILYQEGVQNVLFSWRLILSWMLNGFISATMIFFFCTKAIEPQAFNEEGRTAGRDMLAVTMYTCVVWVVNLQMALAIRYFTLIKHIFIWGSIAYWYLFLMVYGAMPPNISTNVYKVFIETLAPSPSFWIVTFFVAISTLIPYVSCSVIQMWFFPMYHQMVQWIRYERKTNGPE* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1394 1166 CDD P-type_ATPase_APLT_Dnf-like 59 1029 - -
Gso4g1394 1166 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Gso4g1394 1166 SFLD p-type atpase 408 920 IPR044492 -
Gso4g1394 1166 SUPERFAMILY HAD-like 421 924 IPR036412 -
Gso4g1394 1166 Pfam Phospholipid-translocating P-type ATPase C-terminal 897 1147 IPR032630 -
Gso4g1394 1166 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 7 1166 - -
Gso4g1394 1166 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1154 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gso4g1394 1166 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 841 951 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso4g1394 1166 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Gso4g1394 1166 PRINTS P-type cation-transporting ATPase superfamily signature 869 888 - -
Gso4g1394 1166 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 498 707 IPR023299 GO:0000166
Gso4g1394 1166 SFLD C1.7: P-type atpase like 408 920 - -
Gso4g1394 1166 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1147 IPR023298 -
Gso4g1394 1166 SUPERFAMILY Calcium ATPase, transduction domain A 147 285 IPR008250 -
Gso4g1394 1166 Pfam Cation transport ATPase (P-type) 537 630 - -
Gso4g1394 1166 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 7 1166 - -
Gso4g1394 1166 Gene3D - 705 909 IPR023214 -
Gso4g1394 1166 Gene3D - 550 704 IPR023299 GO:0000166
Gso4g1394 1166 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Gso4g1394 1166 Gene3D - 118 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1394 Gso-Chr4 41008787 41019405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1394 3 1166 Primary Pumps ATPases AT1G68710 71.872 0.0 1802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1394 K01530 - gmx:100798329 2318.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1394 4 41008787 41019405 Gso6g1659 6 17656167 17664889 GST
Gso4g1394 4 41008787 41019405 Gso6g1772 6 20452283 20459148 GST