Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1389 ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGTCAGTGACGCCGGCGATTGACCACTACGGCGCCTTCCGGAGCAATGCGGGTGGTCCGTGCGAGCCGGAGAAGAAGAGGACCGAGTCTGGAGGAGGACCGAGTCAGAGCGAGGTAGGTGAGTCTGGCAGAACGAGTTCGAATTGCGAGTCGCTGAGCTTCAGGCTGGGGAACCTCCAGAAGTACGTGCAGGGCGAACACGTTGCAGCCGGCTGGCCCGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATTCAAGGCTGGGTCCCCCTCCGCGCCGACGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGGACGTACAGTAGTGTGTTTAGGGCGAGGGAGCTTGAGACGAGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTCGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATACTGATCCTGCGACGGCTTGATCACCCCAATATCATAAAGCTTGAGGGTTTGATTACTTCGAGGTTGTCGTGTAGCATATACCTCGTGTTTGAGTACATGGAGCATGACATTACAGGGCTCTTGTCTTCACCTGATATCAAGTTCACTGAACCGCAGATTAAGTGCTACATGAAACAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGAGGAGTGATGCATAGGGACATTAAGGGGTCGAATCTTTTGGTGAATAATGAAGGGGTTTTGAAGGTGGCAGATTTTGGGTTGGCAAATTATGTCAATTCTGGGCACAGGCAACCTCTGACGAGTCGTGTTGTCACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTCGGTTCGACAGATTATGATCCGTCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCGGAGCTGCTTGTTGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAACAACTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCTGACGAATACTGGAAAAAGTCTAAACTTCCTCATGCAACTTTATTTAAGCCAGAGCAACCATATGATAGTTGCCTTCGACAGTCCTTTAAAGATTTGCCAGCGACCAGTGTACATCTGCTACAAACTCTTCTTTCTGTTGAACCATACAAACGTGGAACTGCAACATCTGCTCTATCATCAGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTGCCAGTATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGATGAATCAAGGAAAAAGATTAGTGGACGAGTTCGAGGAACTGCAACAAGAAAACAGTCAAGAAAGCCTCTGGGATTCAATAAACTAGCCCCAGCAGAGGGTTTGGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATATTTCCACATCCTTGAAGAAGAGAAGATTAAAATAGGTGACAAAGCACAAAAGTCATCCAGTGGTAAACCTGAAGATGCTTTCCATATGAAGAATGCATCGCAAGGAGATATTCCCCTTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGACACTTCATTTCGATCCCATTGTCGAACTATTTCAAGAGGACATATTTTCAATGCATTAGAACCTTCTACATTAAATACAAGAAATAATTTGGACACCACAAACCAGGAAAATAAGGAGTTTTGTGGGAGATACCCCAATTCTAGGGGCCATGACCTACTTGAAATTTCTAAGCTTTCAATGCAGAACCAGTGGAGTAAGTTTGATCGCCCAGACTCATTTGATGCTTCAGATGAGTACCACTCACAAGAATTGTCTACGGCCCTTTATCACAGAGAAGATTCAGTATCCAAGAGAAGTAACCTGACTTTTCAAGATCAAGGAGAAAAGGTTGAATTTTCTGGACCCCTACTATCTCAAATGCACACAGTTGATGAGCTCTTGGAAAGGCACGAGCGCCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGCTAGGGAAGTAA 2025 0.476 MGCVSSKQAVSVTPAIDHYGAFRSNAGGPCEPEKKRTESGGGPSQSEVGESGRTSSNCESLSFRLGNLQKYVQGEHVAAGWPAWLSAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETRKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHRQPLTSRVVTLWYRPPELLLGSTDYDPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPEQPYDSCLRQSFKDLPATSVHLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPVYPPSKEIDAKHRDESRKKISGRVRGTATRKQSRKPLGFNKLAPAEGLASQTQTSQKVNGRYFHILEEEKIKIGDKAQKSSSGKPEDAFHMKNASQGDIPLSGPLQVSTSSGFAWAKSRKDDTSFRSHCRTISRGHIFNALEPSTLNTRNNLDTTNQENKEFCGRYPNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSTALYHREDSVSKRSNLTFQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKLGK* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1389 674 CDD STKc_CDK9_like 104 388 - -
Gso4g1389 674 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Gso4g1389 674 MobiDBLite consensus disorder prediction 407 423 - -
Gso4g1389 674 MobiDBLite consensus disorder prediction 41 56 - -
Gso4g1389 674 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1389 674 MobiDBLite consensus disorder prediction 406 456 - -
Gso4g1389 674 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1389 674 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1389 674 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 32 667 - -
Gso4g1389 674 Gene3D Transferase(Phosphotransferase) domain 1 187 426 - -
Gso4g1389 674 PANTHER CELL DIVISION PROTEIN KINASE 32 667 - -
Gso4g1389 674 MobiDBLite consensus disorder prediction 23 56 - -
Gso4g1389 674 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Gso4g1389 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Gso4g1389 674 SUPERFAMILY Protein kinase-like (PK-like) 98 395 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1389 Gso-Chr4 40830160 40836383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1389 96 447 Core Cell Cycle Gene Families AT5G10270 48.370 7.36e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso4g1389 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1389 - - gmx:100796719 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1389 4 40830160 40836383 Gso6g1666 6 17799703 17807217 GST