Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1384 ATGTCAGAGCAGGAAACCGATTTATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTAGTTGTTGGGGATTCGTTGGAAACTGACGCGCGAGTTTTGCTAAAGCTGAAATCATATTTGCAAACCCAAACTCTTGCAAATAAAGGAGGGTACATAAGCTGGAACAAGAACAGTTCAAATCCTTGTGATTGGTCAGGAATCTCTTGTGACCTCTTCAACGGAACAACAAAGAGGGTTGTGAAAGTAGACATCTCTTACAGTGACATATATGGTAACATATTCGAAAATTTCTCTCAACTCACTGAACTCACACACCTTGACATCTCTTGGAACTCTCTCTCTGGGGTGATTCCTGAGGACTTGAGGAGGAGCCACCAGCTTGTGTATCTTAATCTCTCCCATAATACTCTTATGGGAGAGTTGAACTTGAAGGGTTTGACACAGTTGCAAACAGTGGACCTTTCTGTTAATAGATTTGTTGGGGGACTTGGGTTGAGTTTCCCTGCCATTTGTGATAGTTTGGTGACTTTGAATGCTTCAGACAATCACTTGAGTGGTGGGATTGATGGCTTCTTTGATCAATGCTTGAGGTTGCAATACTTGGATTTGAGCACCAACCATCTGAATGGGACCCTATGGACTGGATTATACAGGCTGAGAGAGTTTTCAATCTCAGAGAATTTTCTCACTGGGGTTGTTCCTTCCAAGGCTTTTCCAATTAATTGTAGCCTTGAAAATCTTGACCTTTCGGTCAATGAGTTTGATGGTAAGCCCCCAAAGGAGGTTGCTAACTGCAAGAATTTAGAGGTTCTCAACCTTTCTAGTAACAATTTCACTGGTGATGTTCCCAGTGAAATTGGTTCCATTTCTGGTCTCAAGGCATTGTTCTTGGGGAACAACACTTTCTCAAGGGATATCCCAGAGACCCTTTTGAACCTAACCAATTTGTTCATCTTGGACTTGAGCAGAAACAAATTTGGTGGGGAGGTGCAGGAGATTTTTGGGAAATTCAAGCAACTTAAGTTTCTTGTGCTGCACTCAAATTCCTACACTAGAGGGTTGAACACATCAGGCATTTTTACATTGACAAACCTTAGCCGTTTGGACATAAGCTTCAATAACTTTTCAGGTCCATTACCTGTTGAAATCTCACAAATGTCTGGACTTACCTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCATCTGAATTGGGAAAGTTGACTCGCCTTATGGCACTTGATCTTGCCTTCAACAATTTCACTGGACCAATCCCTCCAAGCCTTGGAAACTTGAGTTCTCTCCTATGGCTAACCCTTTCAGATAATTCGTTATCTGAAGAAATCCCACCAGAGCTGGGAAACTGCTCAAGCATGTTATGGCTGAACCTTGCAAACAACAAACTCTCGGGAAAATTTCCTTCTGAGCTAACGAGAATTGGAAGGAACGCAAGGGCCACATTTGAATCAAATAATAGAAACCTTGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGCAATGAAGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGTAGGGCCCTTTGGGATAGGTTGCTCAAAGGATATAGTATTTTCCCCATGTGTTCATCTCATCCCTCTTCTAGACCATCACACATAACAGGGTATGTTCAGCTAAGTGGGAACCAATTGAGTGGTGAAATTCCTTCAGAAATTGGGACAATGGTGAACTTCAGCATGTTGCATTTTGGGGATAACAAGTTTACTGGGAAATTCCCTCCTGAGATGGTAGATTTGCCACTTGTAGTCTTGAACATAACCAGAAACAATTTTTCTAGTGAACTTCCAAGTGATATTGGCAACATGAAGTGTCTACAGGATCTGGATTTATCTTGGAACAATTTCTCCGGAGCATTTCCCGTAAGTTTGGCGCACTTGGATGAGCTTAGCATGTTCAACATCTCATATAATCCTCTCATATCTGGTACAGTCCCACCAGCTGGACACTTACTCACTTTTGACAATGATTCATATTTGGGTGACCCCCTTTTGAACCTATTCTTTAACGTCCCTGATGATAGAAATAGGACACCCAATGTCTTGAAAAATCCCACAAAATGGTCTTTGTTTTTGGCTCTAGCACTGACTATCATGGCCTTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCAAAGGTGGAACCAGGATACCTCATGAAGAATACAAGGAAGCAAGAACATGATTCAGGCAGCACCGGATCCTCAGCATGGTATTTCGACACTGTCAAGATATTCCACCTGAACAAGACAGTTTTCACACATGCTGACATCTTAAAAGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACAGTGTATAGAGGGATGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAGAAGGAAGGAACCGAGGGTGAAAAAGAATTCAGAGCCGAAATGAAGGTTCTGAGTGGTCATGGATTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTTGTCTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACCAATACAAAAAGGTTGACATGGAAAAGGCGCCTAGAAGTGGCAATCGATGTGGCTAGAGCACTAGTCTATTTGCACCATGAGTGCTACCCTTCTATTGTTCATAGAGATGTGAAGGCTAGTAATGTGTTGCTAGACAAAGATGGCAAGGCCAAGGTCACAGACTTTGGACTTGCTAGAATTGTTAATGTTGGAGATAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGCAAGCCACAACAAAAGGGGATGTGTATAGTTTTGGGGTGTTGGTCATGGAGCTAGCAACAGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGACCCGGCGTGTTATGATGATGGATTCTGGAAGACAAGGTTGGAGTCAATCTGTGCCAGTTTTGCTGAAGGGATGTGGGGTAGTTGAAGGTGGAAAGGAGATGGGTGAATTGCTCCAAGTTGGAGTGAAGTGCACACATGATGCACCACAGACTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTCATTAGGATATACAATCCCATTTGGGACTCAAATTATGGACACATTGTGTAG 3270 0.4312 MSEQETDLWGFLFVCFLILFSGKLVVGDSLETDARVLLKLKSYLQTQTLANKGGYISWNKNSSNPCDWSGISCDLFNGTTKRVVKVDISYSDIYGNIFENFSQLTELTHLDISWNSLSGVIPEDLRRSHQLVYLNLSHNTLMGELNLKGLTQLQTVDLSVNRFVGGLGLSFPAICDSLVTLNASDNHLSGGIDGFFDQCLRLQYLDLSTNHLNGTLWTGLYRLREFSISENFLTGVVPSKAFPINCSLENLDLSVNEFDGKPPKEVANCKNLEVLNLSSNNFTGDVPSEIGSISGLKALFLGNNTFSRDIPETLLNLTNLFILDLSRNKFGGEVQEIFGKFKQLKFLVLHSNSYTRGLNTSGIFTLTNLSRLDISFNNFSGPLPVEISQMSGLTFLTLTYNQFSGPIPSELGKLTRLMALDLAFNNFTGPIPPSLGNLSSLLWLTLSDNSLSEEIPPELGNCSSMLWLNLANNKLSGKFPSELTRIGRNARATFESNNRNLGGVVAGNSECLAMKRWIPADYPPFSFVYTILTRKNCRALWDRLLKGYSIFPMCSSHPSSRPSHITGYVQLSGNQLSGEIPSEIGTMVNFSMLHFGDNKFTGKFPPEMVDLPLVVLNITRNNFSSELPSDIGNMKCLQDLDLSWNNFSGAFPVSLAHLDELSMFNISYNPLISGTVPPAGHLLTFDNDSYLGDPLLNLFFNVPDDRNRTPNVLKNPTKWSLFLALALTIMAFGLLFLVICFLVKSPKVEPGYLMKNTRKQEHDSGSTGSSAWYFDTVKIFHLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGMFPDGREVAVKKLQKEGTEGEKEFRAEMKVLSGHGFNWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTNTKRLTWKRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARIVNVGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWTRRVMMMDSGRQGWSQSVPVLLKGCGVVEGGKEMGELLQVGVKCTHDAPQTRPNMKEVLAMLIRIYNPIWDSNYGHIV* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1384 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Gso4g1384 1089 Gene3D Ribonuclease Inhibitor 562 700 IPR032675 -
Gso4g1384 1089 ProSiteProfiles Protein kinase domain profile. 799 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1384 1089 Pfam Protein kinase domain 799 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1384 1089 Pfam Leucine rich repeat 99 141 IPR001611 GO:0005515
Gso4g1384 1089 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Gso4g1384 1089 Gene3D Phosphorylase Kinase; domain 1 766 878 - -
Gso4g1384 1089 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Gso4g1384 1089 SUPERFAMILY Protein kinase-like (PK-like) 779 1074 IPR011009 -
Gso4g1384 1089 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1080 - -
Gso4g1384 1089 SUPERFAMILY L domain-like 81 288 - -
Gso4g1384 1089 Gene3D Ribonuclease Inhibitor 335 512 IPR032675 -
Gso4g1384 1089 SMART serkin_6 799 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1384 1089 SMART LRR_typ_2 317 340 IPR003591 -
Gso4g1384 1089 SMART LRR_typ_2 104 128 IPR003591 -
Gso4g1384 1089 SMART LRR_typ_2 634 657 IPR003591 -
Gso4g1384 1089 SMART LRR_typ_2 366 390 IPR003591 -
Gso4g1384 1089 SMART LRR_typ_2 438 462 IPR003591 -
Gso4g1384 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1080 - -
Gso4g1384 1089 SUPERFAMILY L domain-like 569 674 - -
Gso4g1384 1089 Gene3D Ribonuclease Inhibitor 29 171 IPR032675 -
Gso4g1384 1089 Gene3D Transferase(Phosphotransferase) domain 1 880 1082 - -
Gso4g1384 1089 Gene3D Ribonuclease Inhibitor 244 334 IPR032675 -
Gso4g1384 1089 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Gso4g1384 1089 Gene3D Ribonuclease Inhibitor 172 243 IPR032675 -
Gso4g1384 1089 SUPERFAMILY L domain-like 62 480 - -
Gso4g1384 1089 CDD STKc_IRAK 805 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1384 Gso-Chr4 40666842 40670956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1384 81 480 Receptor kinase-like Gene Family AT1G55610 29.742 9.79e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gso4g1384 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1384 - - gmx:100813425 2172.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1384 4 40666842 40670956 Gso6g1671 6 17992542 17996599 GST