Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1380 ATGTCGAATTATGACGAGATTTTAGGGCTGATATGGGAAAATGGCCAGCTATCCATGCATGGGCTTGCTGGGCTTCAACCTACTAACCCTACTCAGGAAAAGCCCATATTGAATAGTGCCCACGACACATTGGAGTCTATTGTTCAACATGCCACGTGCCCACGTTATCAACCGTCAAAATTCACTAGGGAAAAAGGCCATGCCCCTACTAGTAATAGAAAGAACAACTCCATTGGTGCACCCGATGGTGGTGAGGTTCAAGGTGTGCCATCGTCGGCAAGGAAAAGAACATGGTCCAATGCTAACAACATGTTGGAAGAATGTGATATCCTCAGTGGTTGTGCTAGTGCTGGTGCCACCTTTTGTAGGGACAATGATACAGCCATGATAACATGGGCTTCTCTTGAATCTGGTCGGAACTTGAAGACCATAGAGGAAGATTCAGCTTGTCACTGTGGATCGGAAATTCGAGACAACCAAGATGACAGAGACAGCAAAGCAGAAGTAGGCCAAAGCAACTCAAAAAGACGAAGTCGAACTGCTGCCATCCACAACCAGTCTGAGCGGAAAAGAAGAGATATAATTAATCAGAAGATGAAAGCCTTGCAGGGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTAGATGAGGTGATAAACTACTTAAAGCAGTTGCAAGCACAGATCCAAATGATGAACAGGACAAGCTTGCCCCAAATGATGGTGCCTTTGGCCATGCAACAGCAGTTTCAGATGTCAATGCTAGCCAGAATGGGTGCTGCTGGGCTTGGCATGGGAATGGGCATGGTGAACATGAACATGGGGAGATGCTAG 843 0.4603 MSNYDEILGLIWENGQLSMHGLAGLQPTNPTQEKPILNSAHDTLESIVQHATCPRYQPSKFTREKGHAPTSNRKNNSIGAPDGGEVQGVPSSARKRTWSNANNMLEECDILSGCASAGATFCRDNDTAMITWASLESGRNLKTIEEDSACHCGSEIRDNQDDRDSKAEVGQSNSKRRSRTAAIHNQSERKRRDIINQKMKALQGLVPNANKTDKASMLDEVINYLKQLQAQIQMMNRTSLPQMMVPLAMQQQFQMSMLARMGAAGLGMGMGMVNMNMGRC* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1380 280 PANTHER TRANSCRIPTION FACTOR PIF7 6 276 - -
Gso4g1380 280 Coils Coil 218 238 - -
Gso4g1380 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Gso4g1380 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 238 IPR036638 GO:0046983
Gso4g1380 280 CDD bHLH_AtPIF_like 179 235 - -
Gso4g1380 280 MobiDBLite consensus disorder prediction 154 189 - -
Gso4g1380 280 MobiDBLite consensus disorder prediction 154 173 - -
Gso4g1380 280 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983
Gso4g1380 280 Gene3D - 173 239 IPR036638 GO:0046983
Gso4g1380 280 SMART finulus 185 234 IPR011598 GO:0046983
Gso4g1380 280 MobiDBLite consensus disorder prediction 55 93 - -
Gso4g1380 280 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 276 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1380 Gso-Chr4 40532437 40537593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1380 6 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.434 9.48e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g1380 HLH 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1380 - - gsj:114409686 519.235