Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1374 ATGGAAGAAGATCAAGAAGTGAAACACATGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGAAGATCCTTGGGTGGCCACATGAGGTCACATGTCACCGCCAATGTTTCAACCGAGGCAGAGAAGCTTTCATCTTTCAACAACAATGGTGGAGGAGGAGATTCTGATCAAGGAGGAACTAACAATGGAGGAGGGTATGGTCTGAGGGAGAATCCAAAGAAGACTTGGAGGTTCAATGATTCGAGTGAGGACAACAACAACAACACTACTTTGTTGGTGTTGGACAAGTTGTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCTGAGAAATTGTCCCAAAACAACAACAGCAGCAGCAGCTTATTATTGGAGGATCAAGATTCGTGGAATGATAATAACACCAATGCTAGCCAGAGCCAGAAGATGACGGTGTTGATGGATGATAGCCACTCTGAGAATGAGGCCACGGCTCCAAATCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACATGGCCCCTTCAACTTCTTCTGTGTCCCTTGTTTCTGAAGCTCATGAGCAGGAGCAGGAAGAGGTTGCAATGAGTTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGTGCGGTCTCAATTCTGTTAATTCAATGAAGTTTGAATCTCCTTCTTTGGTTCCAACCAATTTGGATTCTAAGGCTGAGGGCAAGAGGGTTGTTATCTCTAATGGTTCTGAGAAAAAGGTCACCAAACCAAGGGATGTGAAGTGGGAGTTTTGCAATTTGGATGTTTCAAATCTCAACTCAAAAGGGAAAATGAGTTCAGAGCTTTTGGGTACTCAGAGTCCTGGAAGTGAATTTGGGGTCAACAAGACCATGGTTTCTAATTCTGCATTTGAGGACAATGAAACAGATGATAATCATAATAGTAACAATAAGTGCACTTCAATCAAGGCAAATTTTATGGACTCTGAGTTGAAGTCAAGTTCTTTGAAGAGTTGGGTGAACAACAAGCCCTCAGAAGATGAATTCAGCAAAAGCTCCAATAAGAGAGGAAAGTTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGTCACAAGAGGATCAAGGGTTGTTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAGTTGGAAGCAGAACTCTCCCCTGACCATACAACAGAAAATAAGCTTCTGAAGAATGAGTATGTGGAAGAACATGAAATGGTTACTACTGTTACTACTACTACTAAGACTACTGCTATTACTGATTTTGACAATGAGATAAACACAGTGAGAGATTCCAAGAAGGGGAAAGTGCATGAGTGTTCAATTTGCCTCAAGATTTTTCCATCTGGCCAAGCATTGGGTGGCCACAAGAGATCTCATCACTTGGCTGGTGGGTCTGAGAGTGCTAGAAATTTTCAAAGTCAAACAATTGTACTTCAGGAAGCAGCACCAGAAATAAGGGACTTTTTTGACCTTAACCTTCCTGCTTCTACAGAGGAAGAAGGTACTGTCCATCGCCATGCTGAGCATTACAAACCTTGGTGGGTAGTAGGAGGAAATCACAAGCAGGAGGCACTGGTTGGCCTCATTTCTAACTAA 1671 0.4327 MEEDQEVKHMCKFCSKSFPCGRSLGGHMRSHVTANVSTEAEKLSSFNNNGGGGDSDQGGTNNGGGYGLRENPKKTWRFNDSSEDNNNNTTLLVLDKLCKECGKGFHSWKALFGHMKCHSEKLSQNNNSSSSLLLEDQDSWNDNNTNASQSQKMTVLMDDSHSENEATAPNRRRRSKRRRTRYMAPSTSSVSLVSEAHEQEQEEVAMSLMMLSRDVSPWCGLNSVNSMKFESPSLVPTNLDSKAEGKRVVISNGSEKKVTKPRDVKWEFCNLDVSNLNSKGKMSSELLGTQSPGSEFGVNKTMVSNSAFEDNETDDNHNSNNKCTSIKANFMDSELKSSSLKSWVNNKPSEDEFSKSSNKRGKFECTTCKKIFHSYQALGGHRASHKRIKGCFASRNESSENSTELEAELSPDHTTENKLLKNEYVEEHEMVTTVTTTTKTTAITDFDNEINTVRDSKKGKVHECSICLKIFPSGQALGGHKRSHHLAGGSESARNFQSQTIVLQEAAPEIRDFFDLNLPASTEEEGTVHRHAEHYKPWWVVGGNHKQEALVGLISN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1374 556 Gene3D Classic Zinc Finger 1 122 - -
Gso4g1374 556 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Gso4g1374 556 MobiDBLite consensus disorder prediction 395 414 - -
Gso4g1374 556 MobiDBLite consensus disorder prediction 43 64 - -
Gso4g1374 556 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Gso4g1374 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 363 390 IPR013087 -
Gso4g1374 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Gso4g1374 556 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 556 - -
Gso4g1374 556 SMART c2h2final6 96 118 IPR013087 -
Gso4g1374 556 SMART c2h2final6 462 484 IPR013087 -
Gso4g1374 556 SMART c2h2final6 9 31 IPR013087 -
Gso4g1374 556 SMART c2h2final6 363 385 IPR013087 -
Gso4g1374 556 ProSitePatterns Zinc finger C2H2 type domain signature. 365 385 IPR013087 -
Gso4g1374 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Gso4g1374 556 SUPERFAMILY beta-beta-alpha zinc fingers 9 118 IPR036236 -
Gso4g1374 556 MobiDBLite consensus disorder prediction 122 195 - -
Gso4g1374 556 MobiDBLite consensus disorder prediction 43 85 - -
Gso4g1374 556 MobiDBLite consensus disorder prediction 122 163 - -
Gso4g1374 556 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 556 - -
Gso4g1374 556 SUPERFAMILY beta-beta-alpha zinc fingers 363 484 IPR036236 -
Gso4g1374 556 Pfam C2H2-type zinc finger 363 387 - -
Gso4g1374 556 Pfam C2H2-type zinc finger 98 120 - -
Gso4g1374 556 Pfam C2H2-type zinc finger 9 31 - -
Gso4g1374 556 Pfam C2H2-type zinc finger 461 485 - -
Gso4g1374 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 462 484 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1374 Gso-Chr4 40215462 40218069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1374 457 524 C2H2 Transcription Factor Family AT1G26610 49.275 6.76e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g1374 zf-C2H2_6 8.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1374 - - gmx:102662018 1036.17