Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1352 ATGATTATGATGATGGCAAGTTCAAGAGAAGGTCGTCAAGCAAAGCAAGAGGGTGACACCACTAATATTGACAAGTTCTCCCAGGCATCGTCCACTTCAAGACAATGGTCAGCTTTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTTGGAGGGAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTTCCCACAGCAATTCAGCTATATGATCTTCAAGACAAACTTGGACTAAGCCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCCACCAAATTTGACATTGACAAGCTCCCTCCACTCCAATTCCCTCAGGGTTTTGGTCAATTTCAGCATCCACAAACCCTACTCCCCTTCCATGATTCAAGTGCTGCCTCTCATCAGCTCTCTCTAGGACCCTTCTGTGATGCTAGCTCCACATTTGTGAGGGATGGGGGGATTCAAAACCTCATGGCAAAGTCAAGGTATTGGGAGAACATAGATTCAATGTCAAGATTAAGAGGCAATAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAGTGAGCAAGAGAATCATGATCAAGATGGTGTTGTTGGAGGTTACAACAGCTTGCAAGTTTCTACTCAGAGGCTTTTCCCAATGCGTAGTAGTAGTACTACTACTACTACTACTCACTCCCTTTTACCTGGTTTGTTTAACAATTCCATGCCATATAACTCCTACAACTCTGAGCCTTCTAGTTTGTCTTTATCTCAATTTGGAAGCCATGGATTGTTCCCTACTCAACAAGTAGATCCTAATCCAAGCAGCGGCAACAATGGTGTGCAATTCCAATCTTCTTTTCCATTACCATCATCTGGCTCTCAATTATTTTTTGGGTCATCTTCTGCTACACCATCAATGTTCACCACCTATGCTCCATTTATTGCACCCTCAGTGGACACTGATCCAAGACAGTTCAACCACATTCAGTTCTTGAACTCAGGTTCTCATATCTTGCCTCATCCTCCTCTCATTCCATCTCTTCATCACTCATTCAATTCACATGTCAGACCCTTCCCAGAAGCACCCTTTAGTTCAAAGCTTTTGGATTCAAACAGCAGCAACCGTAGCCAGGAAAATCATAAGGGTAGCACTTCTTGA 1164 0.4338 MIMMMASSREGRQAKQEGDTTNIDKFSQASSTSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFGQFQHPQTLLPFHDSSAASHQLSLGPFCDASSTFVRDGGIQNLMAKSRYWENIDSMSRLRGNKEAEKGKWIKTSEQENHDQDGVVGGYNSLQVSTQRLFPMRSSSTTTTTTHSLLPGLFNNSMPYNSYNSEPSSLSLSQFGSHGLFPTQQVDPNPSSGNNGVQFQSSFPLPSSGSQLFFGSSSATPSMFTTYAPFIAPSVDTDPRQFNHIQFLNSGSHILPHPPLIPSLHHSFNSHVRPFPEAPFSSKLLDSNSSNRSQENHKGSTS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1352 387 ProSiteProfiles TCP domain profile. 53 111 IPR017887 -
Gso4g1352 387 Pfam TCP family transcription factor 53 165 IPR017887 -
Gso4g1352 387 MobiDBLite consensus disorder prediction 364 387 - -
Gso4g1352 387 MobiDBLite consensus disorder prediction 259 286 - -
Gso4g1352 387 MobiDBLite consensus disorder prediction 367 387 - -
Gso4g1352 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 383 IPR005333 GO:0003700
Gso4g1352 387 PANTHER TRANSCRIPTION FACTOR TCP17 3 383 - -
Gso4g1352 387 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1352 Gso-Chr4 39285872 39288654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1352 37 376 TCP Transcription Factor Family AT5G60970 39.481 6.48e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso4g1352 TCP 6.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1352 - - gmx:100788984 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0163 5 1777841 1780027 Gso4g1352 4 39285872 39288654 PCT
Gso17g0675 17 6201669 6203815 Gso4g1352 4 39285872 39288654 PCT
Gso4g1352 4 39285872 39288654 Gso5g0163 5 1777841 1780027 PCT
Gso4g1352 4 39285872 39288654 Gso17g0675 17 6201669 6203815 PCT