Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1349 ATGTATAATCAAGTGAATCGCGGTTCTCATTTTGGGCAGAGTTCTGTCCCTCCGCTGCTGCCACCACCGCCACCACCACCACCGCCATATCAGCAAGCTCCGCCACATTTCCATCAATTCCCACCATCTAACGTTGGTGGTCCTCCACCACCACCACCACCACCACCACCACCACCTAATATTGGGGGTCCACCGCCGCTGCCACCTCCTAACATTGGTGGTCCACCACCACCTCCACCGCCTCATAATGTTTATTTACCCGGATCTCTGCCTCCACCTCCTCCTACTTCGTCTTCCTCAGTTTCCTTGAACCTTGCTGTTCAAGGTTGGCATAATGTGATGCCAAATTCAGGACAATCGTATGCTGTCCCTTCTCAATTACACCATGTGAACACCATGGGGCCACAAACATCTTGGGCTCCAGCGCCACCAACTAGAGTATTGCCGCCGCCACCACCACCTCCCTCGGCTTCCCAAGGACATATTTTGTATAACCCTCCTTTCCATGGTCCTCCTCTGCAGTCCGGTGATGTTCAGAATCTGCATAATGCTCCTCCACCACCACCTCCTTCAGTGTATTTCCATTCAACTGTTGGGAATTACCACGTGCCTTCTGGTGTTCCCCCACCATTGCCATCATCTCCACCACCTGTTCTGCCGGCTCCACCGCCAGTAACGTCTGCATCATCAAATGGTGCACGCACTGATGACACTCACTCTGTGAAGGTTTCTGGCTTGGAATCAAAGGCTGCAGAACTGGTTGACGGAGTTGTAGCTTCTCATCCGTCTGGTGTTGTGCCTGTACATGGTTCTGATTCTAATTGGGATGGTGCAAGTTGTAGAGAGGTTGCTGGTGCTGGCAGAGATGAGGATCTTCCCCCACCCAAGCCAACAGAAGAAAAAACTGTGCAGAAGATTGAAGCTTTGTGTCAGCTTATTGCTGAGAAGGGTGCTGATATCGAAGATAAAATTTGTCAAGATGAATTTCAGAATCCTGAATATGCATTTTTCATTGGTGGAGACCCGGGAACCGAAGCTGCAATTGCTCACACTTATTTCCTGTGGATGAAGAAGAAATATAATTTGGATACTCGATGGCATGAAAAGAGAAGACAATCAGATATAGTATACTCTTCAGGGGAGCAGTATCGTCTGCATGTTACAACCGTGAGTGCCGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAATTATGCCACTGAAGTCCTAACTCATGGACATAATCGGGATGATGAAGTGTTTAGCATGAATAAGAATATAAAGCAGCTGCAGAATTTAACAGAGAATGACCCTGCCAAGGACATCTCATCGTGCAGCGCATCATACTTTGGATCCCTGGGAGCCAGCAAACAGGATGGAGAGGATAGGTGTGGCAAGTCATTGTTCAGGATCATTGCATGTGGAATACATTCAGAAGGAATTACTTTTTATCTCGTTTTTGACGTAGCCCTATCAGAATTCAGAAGTGGACCAGAGATTTTATCTGAATCAGAGCACATCAAATCTGTAAGATCTGTTACCAAGGTTTGTAGTCCTGTGAATGACTCCACTAAAGTGGCTGAATTACCCCTGGGTGCAGCTTTGGAGAAATCTACAGCTCCTGTAGATGATGATTTCACACGTACCAGTACTTCTGATCACAATGAAACCACTACTACTGATAGAGATTCTGGGCTACTCATTAGTAGTGGCAGCCCAATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGATAATGAAGATGAAGGCAATGCTGCGGATGCTAATGTTTTCACGGTCTCAGGAGGTGCTGACACTGGTGTTTCAGCTGCACGTAAAGATTCTGGGAGTTATATGGAGACTGATATCGGATCTAAGATTCCTTCCAGTGCCCAAAAGGGGTTTGGGCCGCTCTCCAGAAAATCGCAGGATGATTCGGAAATAGCTCCACATTTATTACGAGAGTCTAAGGAAACCCGTTACCGTAAAAAATCTGTCTCACGTTGGTCTAGTGAGCATAACCTTGAAAATCAGGTGTCTGCTTTAAAGGGCAAAGATGGATTAGAGAGTACTGGCATTGACAGTGGTAGTAAAAGTGGTAATGCTGAAAAGGAAGATGATGGGAAAACCTCAAAGTTGGAACCAAATGTTCTGAAAGTTGATGAATTCGGAAGACATCTCAAAGAAGGTCTTACAGATAGTGACTCTGATGATTCACGCTATCATCAGACAAGCAGACTAAACAAAAGAGATAGAAGCTGGAGTCGCAGCCGGTCTCCTCCAGGCAGGAGGAGTAGGAGGAATAGGAGGAGTCCCTGCAGGAGAAGGGATAAAAGAAACAGGTCTCGCAGCTGGTCTCCCTGGCACCGAAGAAGTAGGAGTAGGTCTCCAATCTCAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAAAAGGGACAAGGATCAGTGCTTGGACTTCCTTCGAGGAAAGTGCTATCGAGGAGCATCTTGCAAGTACATTCACCATGAATCTGACATGAATGCTACTTCAAGGCGCTATAGGAATAAACATGATCTGGAAGCCAGTTCTCGTGCAAAAGAATCTAAGATTAATGGAGACATGAAGAGTATTTCTTCTAAAGTGTTGGATAATGAGCGTGATGGATTCAGAAGTCAGGATGTGAATCTTTTCCAGAATGTAACTAGCCAGGAAGTAATGAAGAAAAAAGAAGATTCAGGAAGGCATGCTGTTGCATCAACTACCATTCATCTTGATGGTCAATCAGTTAATATCAATCTAAGTAAATCTGAATGTAGCAGAGAGGTTGCTCCTGAAAAGCTGGAAACCATAGTAGTGAGGGAGGAACCTAAGACTTTAATCCTTAAAAATGATGGTTTGAAAGCAGGGGATTCTCATCAGCAACACTTAGTTGATGGTTTTCACCCTGAAGCTTTAGGCAGTGGTGATGCTTCTAAACCATCTGGTACATATAAAGATGTCATTCCCTCAGAAGATGGTTCATTTGTTCGGCAAATGCAATTCAATGTTTCTGCTGTTGGAATTCCAGAACATTCTGGGTACATGTCTCAGCATGTGAATGCATCCTTTGTGACTGATTCATCACCTGATAAAAGATCAATTGTTTCTGCTAGTGTTAATGAAGCTCCTGGTAGTGAACTGTTACCATTGTTGTCATCAACTCAGCAACAGTCAGCCACTAGTTCTGTTGGGCAATGTGTCACATCAGAGCAGCCTTCATTGCACTCTGAGGCTTTTGAAGAGTTACCTCCACAGAGTGGTTCTTCTGGGGAATTACGGCTTCATACTTACCAGTTGCCAGCTTCTGCTGTTTCACATTTCCAGGGTGAAAATCCTGTGCATATGCCACAAATTTCAAGGCAGTATGGTGCAATGCAACAAAGTGCATTCTTTCCTTTCCAATCCACTACGAGAGAAAAGTTTGAACCTTACCCAGCTCCATTACACATGCAGAATGCTCACTTCAATGTACCACCTAATAGCTCTTGGACATCCTTGCCACTGCCACCACCACCGCCACCAGGCCCACCACCAAGAGCGGTGTATAATTCCAGTTTAAACTCAGGAGTTGTAAAATCATATATTTCTTCTGAATTCAATCAGAGTCAATTGCATTCAAGAACTGACTTTGTTTCTCAGACTTCCATGAAGTCTGGGTTACCAACTGGTTCTCAGAATTCTGAATTTCAGGATCAAGCATACCCTCCAATGCAGGATCATTCACTAATTTTCATGCTTACAGAACCTTTCTCTCCAAAGCATCTCCCTCAGGGGAACCCAGCTAGTCAATTGCCTTCAGGCTCTAATCTCAATAGAGATGATTTTCATAATCAACTTCCTATGCAGGATTCAAAATTTTCAAGTACCACATCATTTGGGAGCCTGCAGCCTCAATCAAATCAATTTTCCTGGAAGTTGGATGTGAACAGACTACAACCTACTCTGGGTGGCAAGTTGCCTCCTGAAGGACATCTTATGACATCTTCCCACATCGATTCATTATCACAGAAGCAACAACCAATGTATAATTTTCAATGTTCTGTATCCGAGGCTAATTTGGGTGTGCCTGGGGAGACTGTTACTGTTTCAAGATATCCATCTGATTTTCTGGATAGCAATCATTCAACTTCTCTTCCATCTTTTGGGGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTCAGTTCAAGTATTTATAGACAGGAAGATGAAATAATCCATGGTAACAATTATGCTTCTTCTAGATTGAACCATACTCCTGTAAATGGGGAAGGTGATGGTGTGGTTGGATTAAGACAGTCAGCTTCCTCATCAAAATCAGCTAGAGCTCTTGGTCAGATTTTACCTAGGTCTGGTGGTGACCAATATGACCCGATTTTTGACAGCATTGAACCATCATCCTCTTCTCTGAAAAAAATTGATTTTGATCAGAAGAAGGAAGTTACAGGTGAATCCAACATCAGCCTAAGGCCCAAAAGTTCTTACATGTCTTTGGACTCGGATGAGAAGAACAAGCAGGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATATTGATGAATATGGTGAAACAGCAGATGCAGAAGTTGGTGCTGTTGAAAATGAGAGCCTAAGTGATGATGTGGATGTTGCAAAACTGACTTCAGGGGAGGTTGAGATTAATCAGGTCAAGTCTCCTGGGAAAAGAAAAAAGAGTAAGGATTCCAGATCAATGAAATTGTTCAAAGTTTCCATTGCAAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGGCAAGGTAATATGAGTAAGGTGGCTTTCAAAACCATTGTGAAAAAGACTGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCCAAGTCCCAAACGAAGATAAGTCAATATATTGATTCATCACAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTCAAGGTATGA 5049 0.4377 MYNQVNRGSHFGQSSVPPLLPPPPPPPPPYQQAPPHFHQFPPSNVGGPPPPPPPPPPPPNIGGPPPLPPPNIGGPPPPPPPHNVYLPGSLPPPPPTSSSSVSLNLAVQGWHNVMPNSGQSYAVPSQLHHVNTMGPQTSWAPAPPTRVLPPPPPPPSASQGHILYNPPFHGPPLQSGDVQNLHNAPPPPPPSVYFHSTVGNYHVPSGVPPPLPSSPPPVLPAPPPVTSASSNGARTDDTHSVKVSGLESKAAELVDGVVASHPSGVVPVHGSDSNWDGASCREVAGAGRDEDLPPPKPTEEKTVQKIEALCQLIAEKGADIEDKICQDEFQNPEYAFFIGGDPGTEAAIAHTYFLWMKKKYNLDTRWHEKRRQSDIVYSSGEQYRLHVTTVSADSDMEMEDDITLSDKDQGSNYATEVLTHGHNRDDEVFSMNKNIKQLQNLTENDPAKDISSCSASYFGSLGASKQDGEDRCGKSLFRIIACGIHSEGITFYLVFDVALSEFRSGPEILSESEHIKSVRSVTKVCSPVNDSTKVAELPLGAALEKSTAPVDDDFTRTSTSDHNETTTTDRDSGLLISSGSPIRLLQDYASDDTSDNEDEGNAADANVFTVSGGADTGVSAARKDSGSYMETDIGSKIPSSAQKGFGPLSRKSQDDSEIAPHLLRESKETRYRKKSVSRWSSEHNLENQVSALKGKDGLESTGIDSGSKSGNAEKEDDGKTSKLEPNVLKVDEFGRHLKEGLTDSDSDDSRYHQTSRLNKRDRSWSRSRSPPGRRSRRNRRSPCRRRDKRNRSRSWSPWHRRSRSRSPISRRSGDFRGENVKRDKDQCLDFLRGKCYRGASCKYIHHESDMNATSRRYRNKHDLEASSRAKESKINGDMKSISSKVLDNERDGFRSQDVNLFQNVTSQEVMKKKEDSGRHAVASTTIHLDGQSVNINLSKSECSREVAPEKLETIVVREEPKTLILKNDGLKAGDSHQQHLVDGFHPEALGSGDASKPSGTYKDVIPSEDGSFVRQMQFNVSAVGIPEHSGYMSQHVNASFVTDSSPDKRSIVSASVNEAPGSELLPLLSSTQQQSATSSVGQCVTSEQPSLHSEAFEELPPQSGSSGELRLHTYQLPASAVSHFQGENPVHMPQISRQYGAMQQSAFFPFQSTTREKFEPYPAPLHMQNAHFNVPPNSSWTSLPLPPPPPPGPPPRAVYNSSLNSGVVKSYISSEFNQSQLHSRTDFVSQTSMKSGLPTGSQNSEFQDQAYPPMQDHSLIFMLTEPFSPKHLPQGNPASQLPSGSNLNRDDFHNQLPMQDSKFSSTTSFGSLQPQSNQFSWKLDVNRLQPTLGGKLPPEGHLMTSSHIDSLSQKQQPMYNFQCSVSEANLGVPGETVTVSRYPSDFLDSNHSTSLPSFGGSRISAHYNPYASTFEKPLSSKFSSSIYRQEDEIIHGNNYASSRLNHTPVNGEGDGVVGLRQSASSSKSARALGQILPRSGGDQYDPIFDSIEPSSSSLKKIDFDQKKEVTGESNISLRPKSSYMSLDSDEKNKQEEVGAVASTTSQNIDEYGETADAEVGAVENESLSDDVDVAKLTSGEVEINQVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQTKISQYIDSSQRKLTKLVMGYVDKYVKV* 1683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1349 1682 MobiDBLite consensus disorder prediction 548 577 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 851 876 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1180 1197 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1 101 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1267 1311 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1273 1311 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 142 160 - -
Gso4g1349 1682 Gene3D - 820 875 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1460 1485 - -
Gso4g1349 1682 ProSiteProfiles Zinc finger C3H1-type profile. 821 848 IPR000571 GO:0046872
Gso4g1349 1682 SUPERFAMILY Surp module (SWAP domain) 293 357 IPR035967 GO:0003723|GO:0006396
Gso4g1349 1682 MobiDBLite consensus disorder prediction 16 98 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 983 1006 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1508 1538 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 205 224 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 709 768 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1227 1249 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1177 1198 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 769 806 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 549 568 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 690 818 - -
Gso4g1349 1682 PANTHER EXPRESSED PROTEIN 50 1682 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1069 1092 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 590 661 - -
Gso4g1349 1682 Gene3D Surp module 276 363 IPR035967 GO:0003723|GO:0006396
Gso4g1349 1682 MobiDBLite consensus disorder prediction 132 243 - -
Gso4g1349 1682 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 50 1682 - -
Gso4g1349 1682 MobiDBLite consensus disorder prediction 1069 1108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1349 Gso-Chr4 39156818 39169284 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso4g1349 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1349 - - gsj:114409657 2938.67