Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1344 ATGGAGTCTTGGAGCTATGTTGCTGAGGAGAAAGGGTATGTCTCCAGTGAGGCACTATCACCTCCCAACACACTTGAGAGAAGCAAAGGTTCCTGTTTTGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGGTTTGGGCCAGCAAAACGTTGAGGATCAAGGTTTTGGGGAGTTGGGTTTTCCAGGAATGTTGGGGAAGCAGTTGTGCGGTGATGATCCTAATCCTATTGGTGCTGTTCAGAGCAGAAAGGTGGATGATGTTGTTGTTGACTGCAGAATCACTAGTCCTAGTCCTGTTGTGGCTGCCCCAAATGGATTTTCTTCAAGGGAGGACTTCAATTCCAAGCTTTCAAACGCTCTGGTGGACTCTAATGGTGGAAATTCACTCATTGATTTGAAGCTGGGTTGGTTTGCTGACCATGGAGATGCCATGGTTCCAACATTTTCCAAGGGAGCCCCCATTTTGTCTTCTTCCGAGTTGTCGACGCCACCAAAGAGGGTGAGAGCTTCGGGGGCGCATTCTCAGACTGCTTACTGCCTAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCACAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATATGCTGATAGCAGATTCCAGGAGACCATGCTAACATCGTCTTTTATCTGCCAAGAGATACTCCCCAGTGGAGTCTTGTCTTCTGAGAAATATGGAGCAAGTGACATGTGGAGACCTATCAAAGCTGAAGACAGCACCGGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTATTACCAATGGACATCCTCAGTCACGATCTTTATTTCCTTCGTATAGTGGAAAACAACTTCCATTTCTTCATGAAAATGGTGCTACATCTGCCACAGGAAACATCTTCTCTGAAAACAATAACCAATATAATCCTCCTTCCCTCGGTGGCCAAAGTTCCGGGTCACAATCACTATTCCAGGACAGCTCCTTAGGAAGGGAGGACTTCAATGTTTTCGACACAGAATCAGCTGTTCAAGGACTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCGGGCCAATCATCAGGGATTCCCATTGCTCACCCGATGGTTATTCCAAGCAGCCACAGCCATTACAACATGAGTCGGGTTTCTGAAAAGATGATAGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGATAGGTTTCCACCTGAATTCAATCCTGTAGATGGAAGTCATCTTAGTCCCATATTGATATCAGATAATAATGAAATCATCAATTTTGAAATGGCAAATGGGATCTTCCAAGGGTCGGATTTCGTGAACGTGAAAGATCGCCTTTCCTGTGAAGACAGCCTCACCATTGACTTGCTTCAACTATCGTCGCAACTTCAGCGTGTCGAGAATCAGAGGCTGTCCTTGCAGGTGAAACAAGAAAATGATTCTTCCTGCTCTCTGCGGATTACTTGA 1695 0.4549 MESWSYVAEEKGYVSSEALSPPNTLERSKGSCFGWELKTPCSFSNDMLGLGQQNVEDQGFGELGFPGMLGKQLCGDDPNPIGAVQSRKVDDVVVDCRITSPSPVVAAPNGFSSREDFNSKLSNALVDSNGGNSLIDLKLGWFADHGDAMVPTFSKGAPILSSSELSTPPKRVRASGAHSQTAYCLVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYADSRFQETMLTSSFICQEILPSGVLSSEKYGASDMWRPIKAEDSTGFTFRPLSSIPITNGHPQSRSLFPSYSGKQLPFLHENGATSATGNIFSENNNQYNPPSLGGQSSGSQSLFQDSSLGREDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSGQSSGIPIAHPMVIPSSHSHYNMSRVSEKMIGISSQASSGVSDRFPPEFNPVDGSHLSPILISDNNEIINFEMANGIFQGSDFVNVKDRLSCEDSLTIDLLQLSSQLQRVENQRLSLQVKQENDSSCSLRIT* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1344 564 Coils Coil 525 552 - -
Gso4g1344 564 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 564 IPR044817 GO:0003677
Gso4g1344 564 PANTHER 1 PROTEIN, PUTATIVE-RELATED 43 564 - -
Gso4g1344 564 Pfam SBP domain 184 257 IPR004333 GO:0003677
Gso4g1344 564 SUPERFAMILY SBT domain 182 262 IPR036893 GO:0003677|GO:0005634
Gso4g1344 564 Gene3D - 174 245 IPR036893 GO:0003677|GO:0005634
Gso4g1344 564 MobiDBLite consensus disorder prediction 361 390 - -
Gso4g1344 564 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1344 Gso-Chr4 38881177 38885916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1344 135 362 SBP-box Gene Family AT1G69170 44.628 7.62e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso4g1344 SBP 2.7e-30 No_clan