Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1332 ATGCAGGAAATACACTCCATCGGCGGCGGAAGGTTCTTCGGCGGCGGCGGCGACCGGAGGCTGAGGCCGCACCACCAGAACCACCACCAGCAGCCGCCGATAAAATGCCCCCGCTGCGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCATTTCTGCAAGAACTGCCGTCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTTGGCGGCGGTTGCCGGAAATCAAAACGCTCCAACAAGCCCAAAACCACCACCTCAGCCGCCGCCACCACCAGCAGCAACAATAACAATAACAACCCTTCCTCTTCCTCGGAAACCGCTGCGGCAACCGCACCAACGCCACCACAACAACCGCCTCCGCCACTTGAGCTAGAGCATAATTCTCACTCTCACTCCAGCAGCGAAAGCTCCACTTATACCGTCGCTGCCACGGAGGCCATGTCAGCGCCGACAACGAATGCGGTGTCGAACAACAATTTATTACTTGACAACAACCGTGAGTCGAAGATGTTCGCTAACCCTAACCCCTATTTAGAGCAGAGTCGTAGTGGTGGCCTTTTCTCTGACATAGAGAGCTTCAGCAGCCTCGTCAATTTAAACAACCAAGCATTGGGGTTTGGGTTTGGGAACAATAATAGCAACATCAGCATCCTCGATGCGACGTCGTTTCGGTTTGGTGTTAGTGTTACTAATCCGCACGGGAATGATCAGGTGCTTGCGGCACCAGGTGGAGGCCATGGTCAGTGGCAACAACAACAGCAGAATCATCATGAGTTCGGTACGGCGTCGTTTCTTGATCACACCGTGCCGCTTGAGTTTTCTTCGCTGCAGCATAAAGCTGGGCATCAGGGAGGGTTTGGACCGTTGGATTGGCAACCCGGTGGGGATCAAGGTTTGTTTGATCTTCCTAACACTGTTGATCAACCTTACTGGACACACCACACTCATTGGTCTGATCAAGATAATCCTTCTTCTCTCTTTCATCTTCCCTGA 1026 0.537 MQEIHSIGGGRFFGGGGDRRLRPHHQNHHQQPPIKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTTSAAATTSSNNNNNNPSSSSETAAATAPTPPQQPPPPLELEHNSHSHSSSESSTYTVAATEAMSAPTTNAVSNNNLLLDNNRESKMFANPNPYLEQSRSGGLFSDIESFSSLVNLNNQALGFGFGNNNSNISILDATSFRFGVSVTNPHGNDQVLAAPGGGHGQWQQQQQNHHEFGTASFLDHTVPLEFSSLQHKAGHQGGFGPLDWQPGGDQGLFDLPNTVDQPYWTHHTHWSDQDNPSSLFHLP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1332 341 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Gso4g1332 341 MobiDBLite consensus disorder prediction 1 35 - -
Gso4g1332 341 MobiDBLite consensus disorder prediction 78 152 - -
Gso4g1332 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 325 IPR045174 GO:0003700|GO:0006355
Gso4g1332 341 PANTHER DOF ZINC FINGER PROTEIN 4 15 325 - -
Gso4g1332 341 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Gso4g1332 341 MobiDBLite consensus disorder prediction 295 314 - -
Gso4g1332 341 MobiDBLite consensus disorder prediction 92 122 - -
Gso4g1332 341 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1332 Gso-Chr4 38298034 38299738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1332 18 341 C2C2-Dof Transcription Factor Family AT5G60850 36.280 2.41e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso4g1332 zf-Dof 9.2e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0148 5 1604493 1606085 Gso4g1332 4 38298034 38299738 PCT
Gso17g0690 17 6364751 6366230 Gso4g1332 4 38298034 38299738 PCT
Gso4g1332 4 38298034 38299738 Gso5g0148 5 1604493 1606085 PCT
Gso4g1332 4 38298034 38299738 Gso17g0690 17 6364751 6366230 PCT