Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1331 ATGGCCACCAGATTCAACAAGCATGTCCCGCACACCATCTTCGTCAATCTCAAATCCACCGTCATCGACAAAGTCTATGACACCTATCGTCAACTTTTCCACCCCGAACAACTCATCTCCAACAAGGAAGATGCTGCCAACAACTTTATGTATCGGACTGTTAAGAACACTAACAAACTTGTAGCTTCTTCAGGAGGGTCTATTCTCGGATTGAAGTTTCTAGATCCCCTTGCTGAACTTCTCGTCTCAGGCATGATTTTGAAAGCTGGAGCTGAAACAGGAAACTCATCCACAACTAATTTTGATGACAATGACCCTAGGAATGAGTGTGTCATATGCATGACTGAACCAAAGGATACTACTGTTTTACCTTGTCGACATATGTGTATGTGCAATGAGTGTGCAAATGCTCTTCAACATCAATTCAATAAATGCCCTAAATGCCGACAACCTATTGAGGAACTTATTGAGATCAAGATGAACAATGGTGATCAATGA 498 0.4177 MATRFNKHVPHTIFVNLKSTVIDKVYDTYRQLFHPEQLISNKEDAANNFMYRTVKNTNKLVASSGGSILGLKFLDPLAELLVSGMILKAGAETGNSSTTNFDDNDPRNECVICMTEPKDTTVLPCRHMCMCNECANALQHQFNKCPKCRQPIEELIEIKMNNGDQ* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1331 165 Pfam Zinc finger, C3HC4 type (RING finger) 107 154 - -
Gso4g1331 165 ProSiteProfiles Zinc finger RING-type profile. 110 149 IPR001841 -
Gso4g1331 165 SUPERFAMILY RING/U-box 109 155 - -
Gso4g1331 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 160 IPR013083 -
Gso4g1331 165 PANTHER MAHOGUNIN 93 164 IPR045194 GO:0061630
Gso4g1331 165 SUPERFAMILY Tubulin nucleotide-binding domain-like 6 57 IPR036525 -
Gso4g1331 165 SMART ring_2 110 148 IPR001841 -
Gso4g1331 165 Gene3D Tubulin/FtsZ, GTPase domain 2 69 IPR036525 -
Gso4g1331 165 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 93 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1331 Gso-Chr4 38142603 38147580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1331 91 165 C3H Transcription Factor Family AT3G06140 58.667 5.10e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1331 - - gmx:102660432 340.502