Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1316 ATGCAAAACCCTCTAAAACACTCAAAACATCCATTTGCCAAGCTAGTTTCTCTGTCCAAAGAAGACCCACTTACTCATGGAATACTGCGCACCTCTCTATCAGGTTCCTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGATCCTGATGACGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAACAGTTGTTGAACAGATCACTCACTTGACCGCATTCCGGGGATTTGTAGGAACATCTATTCTTATTCTTGTTGGTTGTGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAGTTCTATGATTTTGATAAGTATTGA 492 0.3943 MQNPLKHSKHPFAKLVSLSKEDPLTHGILRTSLSGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPTVVEQITHLTAFRGFVGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1316 163 Pfam SecY 34 139 IPR002208 GO:0015031|GO:0016020
Gso4g1316 163 PRINTS Preprotein translocase SecY subunit signature 36 58 - -
Gso4g1316 163 PRINTS Preprotein translocase SecY subunit signature 91 109 - -
Gso4g1316 163 PRINTS Preprotein translocase SecY subunit signature 125 143 - -
Gso4g1316 163 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 34 161 - -
Gso4g1316 163 Gene3D SecY subunit domain 7 152 IPR023201 -
Gso4g1316 163 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 34 161 IPR002208 GO:0015031|GO:0016020
Gso4g1316 163 SUPERFAMILY Preprotein translocase SecY subunit 32 146 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1316 Gso-Chr4 36254781 36257154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1316 35 163 Chloroplast and Mitochondria Gene Families AT2G18710 91.473 2.10e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1316 K10956 - gmx:100808959 253.062