Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1315 ATGGAATTGAAAAAGGGCAAGCTTGCCAGGTTCTACACGGATGGTAAAAAGCATAAGCAATCGTTTTGGGGAGCAAGAGCAACTGAGCCTCCAGCACTTAAACCTAGCAATTTGCTACCACTAGGGAAAAATAGAATTGCTGAAACATTTAGAATTGGAGGATCGAAGGTGTTCCCGGAGGACCATGAGCCGTGGCGTAAAAGAATACTTGACCCGGGTAGCGATATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCCTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTAATAGAAAACACAGGGTCTACATGTGTAAGGACAGACCTAACACTGCGCATTGTCGTGACCTTTCTTCGCACTATTGCAGACCTTTTTTATCTGTTGCACCTGATAATTAAGTTTAGGACGGCATATGTGGCACCAAGCTCACGGGTATTTGGCAGGGGTGAACTTGTCATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCGAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATGTTTTAGGGGCAGCTTGGTATCTTCTATCCGTGGACCGATACACTACTTGTTGGAAATCCTTTTGCAAAAAGGAACATGATCCTGAAAATTGCTTTCTTTATCTAGACTGCACTTCGTTGAATATTAAGCTGCGCGAGATATGGGCAAATAGTACAAGTGTGTTTAGCAGCTGTGATCCCAGTAATGATAATATTAATTTCAAGTATGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTCTCTTCAAACTTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAGTTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTAATTGGGAACATGCAGACTTATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGTGCCTTACCTGCTGATCTTCGCCGTGATATACAGCGGCATTTGTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCGGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACAAATGGCGGCCGTAGTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGGGAGGAACTTCTTTCTTGGGCTTTACTCCCCAAATCCACCATTAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCCGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCTTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATGACTATGAAAGACCTCAGTTTGAGGGAAACCATTCCTTTAGACGAAGCAGTAGCTGGTGAGAGAAAACATGGGGACTATTCTGCTGGTTCAAATTCAACTCAGACTAAATTGAACCTTGGGGCTACAATTCTTGCTTCGAGATTTGCTGCTAACACACGAAGAGGGGCTCTGAAGATGAAAGATGACATGCCCCAGTTACAGAAGCCTGAAGAACCTGACTTTTCCACTGAAGCTGACGATGATTAG 2142 0.4211 MELKKGKLARFYTDGKKHKQSFWGARATEPPALKPSNLLPLGKNRIAETFRIGGSKVFPEDHEPWRKRILDPGSDIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSTCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRTPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKEHDPENCFLYLDCTSLNIKLREIWANSTSVFSSCDPSNDNINFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMTMKDLSLRETIPLDEAVAGERKHGDYSAGSNSTQTKLNLGATILASRFAANTRRGALKMKDDMPQLQKPEEPDFSTEADDD* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1315 713 Gene3D - 83 403 - -
Gso4g1315 713 PRINTS EAG/ELK/ERG potassium channel family signature 138 147 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g1315 713 PRINTS EAG/ELK/ERG potassium channel family signature 255 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g1315 713 PRINTS EAG/ELK/ERG potassium channel family signature 373 384 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g1315 713 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g1315 713 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso4g1315 713 Pfam Cyclic nucleotide-binding domain 501 589 IPR000595 -
Gso4g1315 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 40 710 - -
Gso4g1315 713 SUPERFAMILY cAMP-binding domain-like 408 600 IPR018490 -
Gso4g1315 713 ProSiteProfiles cAMP/cGMP binding motif profile. 478 608 IPR000595 -
Gso4g1315 713 Gene3D Jelly Rolls 476 596 IPR014710 -
Gso4g1315 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 710 - -
Gso4g1315 713 SMART cnmp_10 478 609 IPR000595 -
Gso4g1315 713 MobiDBLite consensus disorder prediction 688 713 - -
Gso4g1315 713 SUPERFAMILY Voltage-gated potassium channels 72 400 - -
Gso4g1315 713 CDD CAP_ED 478 609 IPR000595 -
Gso4g1315 713 Gene3D Helix hairpin bin 406 469 - -
Gso4g1315 713 Pfam Ion transport protein 80 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1315 Gso-Chr4 36228833 36242738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1315 1 712 Ion Channels AT4G30360 69.505 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1315 K05391 - gmx:100808425 1442.94