Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1294 ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAA 312 0.4006 MDMYIRVKRSKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPVTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1294 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Gso4g1294 103 CDD Ubl_ubiquitin_like 5 72 - -
Gso4g1294 103 PANTHER OS03G0364000 PROTEIN 1 100 - -
Gso4g1294 103 Gene3D - 1 92 - -
Gso4g1294 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gso4g1294 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gso4g1294 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1294 Gso-Chr4 35172400 35181047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1294 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 1.80e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1294 K03873 - gmx:100499885 208.379