Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1292 ATGGCGAAGCAGCAAACACACAAAATCAATGCAAGCACTAACAATAACATTAGCACAACTAACACTGTCACCGCCAAGGTGAAACGAACAAGGAGAAGCGTCCCTAGAGATTCCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACTGGCCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGACGATGAAGAGGCGGCAGCACATGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCGACCTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTAGGGAAGAGTATATTGGATCACTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTACGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGAGTCAACGCTGTGACCAATTTCGACCTCAGCCGCTATATCAAGTGGCTTAAGCCCAATAATAACAACACCACTGTCAACTCTAATCTTATTGACTCTAACCCTAATTGTGAGACGAACTTTACCTCAAACTCTAATCAACAACAAGGATTCAATTTTTTCAACAGACAAGAGTCATTCAATAATGAAGAAGCGGCAATGACTCAGCCTCGGCCAGCTGTTGCCACGTCAGCCCTAGGACTTTTGCTTCAGTCATCCAAGTTTAAGGAAATGATGGAGATGACTTCTGCTACAGATTTGTCAACACCGCCGTCGGAGTCTGAGTTGCCGTCATGCACATTTCCCGATGACATTCAAACATATTTTGAGTGTGAAGATTCCCATAGATATGGAGAAGGGGATGATATTATGTTCAGCGTGCTCAACGGCTTTGTGCCCCCTATGTTCCATTGTGATGACTTTTGA 1053 0.4473 MAKQQTHKINASTNNNISTTNTVTAKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGVNAVTNFDLSRYIKWLKPNNNNTTVNSNLIDSNPNCETNFTSNSNQQQGFNFFNRQESFNNEEAAMTQPRPAVATSALGLLLQSSKFKEMMEMTSATDLSTPPSESELPSCTFPDDIQTYFECEDSHRYGEGDDIMFSVLNGFVPPMFHCDDF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1292 350 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Gso4g1292 350 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Gso4g1292 350 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Gso4g1292 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 337 - -
Gso4g1292 350 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 3 337 - -
Gso4g1292 350 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Gso4g1292 350 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Gso4g1292 350 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1292 Gso-Chr4 34971995 34976340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1292 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.781 8.26e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso4g1292 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1292 K09285 - gmx:100795869 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0596 17 5559215 5562271 Gso4g1292 4 34971995 34976340 PCT
Gso4g1292 4 34971995 34976340 Gso17g0596 17 5559215 5562271 PCT