Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1282 ATGGAAGCCAGCGCTGGACTGGTCGCTGGGTCACATAACCGCAATGAGCTAGTTGTCATTCATGGCCATGAAGAGCCCAAGGCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGATTTGTTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGAAGCCAGCTTTGCCCACAGTGCAAAACCAGATACAAGCGTCTCAAAGGGAGCCCCCGAGTGGAGGGAGATGATGATGAAGAGGATGTGGATGATATTGAGCATGAATTCAATATTGATGAGCAAACGAACAAGCATGGGCAGGTTGCAGAAGCCATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAACACCTGTCATTGCTGGTGGTCGTTCCAGGCCTGTAAGTGGGGAGTTCCCATTATCATCTAACGTTTATGGGGATCAGATGTTATCTTCTTCACTGCATAAAAGAGTGCATCCATATCCAGTGTCTGAACCTGGAAGTGCAAGATGGGATGAAAAGAAAGAAGATGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCAGAACCCGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGACAACCACTGTCAAGGAAAGTACCAATAGCATCCAGCAAAATCAATCCATATAGAATGGTGATTGTGGCACGTCTTGTTATTCTTGCTTTCTTCCTCAGATATAGACTCATGAACCCAGTACATGATGCACTGGGGCTATGGCTAACCTCTATCATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATAGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTAGCCATGGATTACCCGGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAGTCCTTATCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCCATAGAACCTCGGGCACCTGAGATGTACTTCAGTGAGAAGATTGACTACCTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGCCGAGCTATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGTAGCAGTGGGGGTCTTGATACCGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGCTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCCGTTCTCACAAATGCTCCTTTCATGCTAAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTTTTGATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGTATTGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATTCAAGGTCCTGTATATGTGGGGACTGGATGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCGTGTTTTGGAAGCCGCAAGAAGTATAAGGAGAAGAGTAATGCAAATGGAGAGGCTGCAAGACTAAAAGGGATGGATGATGACAAAGAGGTGCTGATGTCCCAAATGAATTTTGATAAGAAATTTGGACAATCCTCTATTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGACATTCTAACAGGTTTTAAGATGCATTGCCGTGGGTGGAGGTCCATTTATTGTATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATCGTCTCAACCAGGTTCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTGTGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACGACTGTTTATCCATTCACCTCCATTCCTCTAGTTGCCTATTGTATTCTTCCAGCAGTTTGCTTGCTTACTGACAAATTCATCATGCCACCGATTAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCCTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTGTATCAGCTCACCTCTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACTAACTTTACTGTTACATCCAAGGCAACAGATGATGAAGAGTTTGGAGAATTGTATACCTTTAAGTGGACTACTCTCTTGATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTATCAATCCTGGGGACCACTGTTTGGAAAGCTTTTCTTTTCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTTAAAGGTTTGATGGGTCGACAAAACCGCACACCCACCATTGTAGTGATTTGGTCAGTCCTATTGGCCTCTATTTTCTCCTTACTATGGGTAAGAATTGATCCATTTGTCCTTAAGAATAAGGGACCTGATACCAAGCTGTGTGGAATCAACTGCTAA 3120 0.4449 MEASAGLVAGSHNRNELVVIHGHEEPKALKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDEQTNKHGQVAEAMLHGKMSYGRGPEDDENSQFPTPVIAGGRSRPVSGEFPLSSNVYGDQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKSNANGEAARLKGMDDDKEVLMSQMNFDKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKNKGPDTKLCGINC* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1282 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gso4g1282 1039 MobiDBLite consensus disorder prediction 182 201 - -
Gso4g1282 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 852 IPR029044 -
Gso4g1282 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 485 623 IPR029044 -
Gso4g1282 1039 Coils Coil 430 450 - -
Gso4g1282 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Gso4g1282 1039 MobiDBLite consensus disorder prediction 136 165 - -
Gso4g1282 1039 SUPERFAMILY RING/U-box 22 107 - -
Gso4g1282 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gso4g1282 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gso4g1282 1039 Pfam Cellulose synthase 332 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso4g1282 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gso4g1282 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1282 Gso-Chr4 34214432 34219125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1282 1 1039 Cell Wall Biosynthesis AT5G17420 85.879 0.0 1843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1282 K10999 - gmx:100799375 2139.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1282 4 34214432 34219125 Gso9g0861 9 18491921 18499228 GST
Gso17g1014 17 9578851 9582436 Gso4g1282 4 34214432 34219125 PCT