Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1277 ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTGTTATGACCCAGCATTTTACTACTACAATAGCAGGCCCTTTTCTCCCATTGACTCTGAAAGCAACCCAACATCAAAACAAAACAACAACAACAACTGTGACCTCGTTCCTTCTCCTACTCCTTTGTCCTTTTTCCACTTTCCTTCTTCTCCCTTTGAAGACACTCAAAATCAAATTTTGCTCGAACAACACCACGATTTTCTCCTTCAGTTTCACCATCAATCTCTCCCCAAAGACCCCGTGCCTCAACCGGCAGTTATCACCACCATGGATCCTTTTGTTAAAAAGAGTGACCAGATCCAAAGAAAAAGACCTGGCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGGTTGAGGGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACCGTGGAGTGGTTATTGAACCAAGCAAAAGTAGAAATCAACCGTTTAGTGAAAGAGAAGAAGAAGAATGATCATCATCATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTAAGTCGAGATCAAGAACAACAACAACAACAACAACAAGAGAAGGTGGAAAAAGTTGTAAAGAGAAGGGTCAAAAACTCTAGAAAGATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGGGAAAGAGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGCCGTGGAGTTCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTCGAACCCCTTTGAAACCGGAGATCAAGAATCTGGTGCCAAGACAAGTCACAGTGTTGATGTGCATCCTTCTTCCTTGGACGTGATTGCTACTGAGGCTAAAGAACAAAGCTACCGTGCAGTAAAGGAGCATAATGATGATGATGATGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTCTGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTAGGAAAGCCGTGGGAGACCTAA 1158 0.4283 MQSQSSDTFPSHNGNDPISCYDPAFYYYNSRPFSPIDSESNPTSKQNNNNNCDLVPSPTPLSFFHFPSSPFEDTQNQILLEQHHDFLLQFHHQSLPKDPVPQPAVITTMDPFVKKSDQIQRKRPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKKKNDHHHQSCSSASSECEEGVSSLDEVVVSRDQEQQQQQQQEKVEKVVKRRVKNSRKISAFDPLAKECRERARERARERTREKMRSRGVLAEESKQCGEETNQDLIQLGSSNPFETGDQESGAKTSHSVDVHPSSLDVIATEAKEQSYRAVKEHNDDDDDSLVVLSKWSPSLIFNNSGFSQDHQFAEFQSLGKPWET* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1277 385 MobiDBLite consensus disorder prediction 260 321 - -
Gso4g1277 385 Pfam TCP family transcription factor 125 274 IPR017887 -
Gso4g1277 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 28 356 IPR005333 GO:0003700
Gso4g1277 385 ProSiteProfiles R domain profile. 254 271 IPR017888 -
Gso4g1277 385 ProSiteProfiles TCP domain profile. 126 184 IPR017887 -
Gso4g1277 385 PANTHER TRANSCRIPTION FACTOR TCP18 28 356 - -
Gso4g1277 385 MobiDBLite consensus disorder prediction 260 287 - -
Gso4g1277 385 MobiDBLite consensus disorder prediction 288 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1277 Gso-Chr4 33197936 33200101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1277 27 268 TCP Transcription Factor Family AT3G18550 34.021 2.80e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso4g1277 TCP 2.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1277 - - gmx:100784394 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1277 4 33197936 33200101 Gso6g1787 6 20812311 20814744 GST