Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1270 ATGTTTTCGGTCATGCCGTCAAGGCCTATTCCTGTTAAACCAGGTGACAGTTTATACCTTTCCAACCTCGATGACATGATCGGAGCTCGTGTTTTTACGCCTACGGTGTACTTCTATCAATCCGATGACACATGCTTCTCAGAAAAACCTGTCACCAAAACACTGCAGTGTGCTCTCGCTGATGTTCTGGTGCCTTATTACCCTCTCTCAGGCAGGCTCAGAAAGACCAAGAATGGTAAACTGGAAGTGTTTTTCGGACCAGATCAAGGAGCACTCATCGTCGAGGCGCGGTCTGATATCGCCTTGGCCGAATTAGGAGACCTCACAGCTCCAAACCCGGATTGGGAGCCTTTGATCTTCAAGTTTCCCGATGAAGAACAATACAAAGTCCTCGAAATGCCACTGGTCATTGCTCAGGTTACCCTTTTCCGCTGCGGTGGCTTTAGCCTCGGTTTGAGGCTGTGCCATTGCATCTGTGATGGCATGGGAGCTATGCAGTTCCTAGGTGCGTGGGCTGCCACAGCAAGAACAGGAACACTAGTAACAGATCCTGAGCCCTGTTGGGATAGGGAAATTTTTAGGCCTCGTGACCCTCCTGAGGTGAAATTTCCCCACATGGAGTTTATGACAATTGAAGAGGGATCCAACCTGACAATGACACTATGGGAAACCAAGCCTGTTCAGAAGTGTTACAGGATCAAGCGTGAGTTCCAGAACCACGTAAAATCTCTTGCTCAGCCATATGATGCTGCAGGCTGCACCACTTTTGATGCTATGGCAGCACATATTTGGAGATCTTGGGTGAAAGCTCTTGATGTAAGACCACTAGATTACCAACTTAGGCTAACATTTTCGGTCAATGCTCGGCAGAAGCTTCGGAATCCTCCACTGAGAGAAGGGTTTTATGGCAATGTGGTGTGTGTTGCTTGCACAACAAGCACTGTCTCAGAGCTTGTTCATGGAAAGCTCCCAGAGACTACCCTTTTGGTGCGCGAGGCGAGACAGAGTGTCTCGGAGGAGTATTTGAGATCCACAGTGGATTTGGTTGAAGTGGATAGGCCAAGGCAGCTTGAGTTTGGTGGGAAACTAACCATAACTCAATGGACTAGGTTCTCAATTTATAAGTGTGCAGATTTTGGGTGGGGTAGACCACTTTATGCTGGTCCTATAGATTTAACACCAACACCTCAGGTTTGTGTGTTTCTACCAGAAGGGGAAGCTGATTGTAGTGGTGGTTCTATGATTGTGTGCATATGCTTGCCTGAGTCTGCTGCAGAGAAGTTCACACAAGACTTGTTGCTCAATTCGGTTTTTTGA 1317 0.4761 MFSVMPSRPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYQSDDTCFSEKPVTKTLQCALADVLVPYYPLSGRLRKTKNGKLEVFFGPDQGALIVEARSDIALAELGDLTAPNPDWEPLIFKFPDEEQYKVLEMPLVIAQVTLFRCGGFSLGLRLCHCICDGMGAMQFLGAWAATARTGTLVTDPEPCWDREIFRPRDPPEVKFPHMEFMTIEEGSNLTMTLWETKPVQKCYRIKREFQNHVKSLAQPYDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARQKLRNPPLREGFYGNVVCVACTTSTVSELVHGKLPETTLLVREARQSVSEEYLRSTVDLVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADCSGGSMIVCICLPESAAEKFTQDLLLNSVF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1270 438 Pfam Transferase family 4 431 - -
Gso4g1270 438 Gene3D - 2 210 IPR023213 -
Gso4g1270 438 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 2 434 - -
Gso4g1270 438 Gene3D - 216 431 IPR023213 -
Gso4g1270 438 PANTHER F21B7.2 2 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1270 Gso-Chr4 32828886 32830427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1270 8 433 Monolignol Biosynthesis Gene Families AT5G48930 30.524 5.49e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1270 K15400 - gmx:100802814 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1270 4 32828886 32830427 Gso6g1792 6 20935818 20937532 GST