Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1260 ATGTCATCACAAGTAGAGCTAAGCATGGATTACAAGCCCTACAGCTACTCCACACTGCTGAAATCATATGCAGATGAAACTGAAACTGATCAGACCCACAAGCTCGAAGAGTTCCTCTCTCGCTTAGAGGAAGAGCGTGTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTAACCAACGCCGTGGAGGCTTCAAGACAGCAACTACAAGCCTTCAGATCGAACCAAGGAACAAGGCCAGTTCTGGAAGAATTCATGCCAATAAAGCATCCAAACTCTCAAGAAAGCACTGAAAAAACATCAAACATATCTGACAAGGCGAATTGGATGACATCAGCTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACCACAATCCACAATTACATCACCAAAAAACGGTGCTGATATGGGCTTTAGCGTGAGCCCTAATCCAGCCCTAGACAACAAACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTCGTGCCAAGGATTAAGGGATCTTCCTGAGGTGGCCCTTGCCTCTTCTGAGAAAGAAATGGAGAAGAAGTGTGAATTAGAGTCAGAGAAATGTTCCAAAAGGGAAAATTCAGGCAAAGGATCAGGGAGTTGTGAAGGGGTTGTAGATCAGGGAAAAAGTGCTTCAGTTGCATCTGAGGCACAAACAACAAATACTACCATCACCACCACAACTAACAACACTACTGGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGATTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTCGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCTAGTCCAAGCCTACAAACCGGAGCCCCAACACCCCAGCTAGTAGTCTTTGGAGGAATTTGGGTGCCACCGGAGTATGCCAGGGCTGCAGCACACTCTGGTGGCCCCACCCTCTGTGGCCCACATCCTACCTCACATGTGCCACCTCCACACTACTGTGCACCCACCCCAATGCCCCAAGAGTTCTATAACTCGGCTCCGTCACTGTCCTTACCGTCACCAGCACATGAAAACATCCTTCACCACCACCATTTTCACATGTACAAGACAGCACCACAGACCCGAAGCTCTCCAGTGTCTGATGTTCGGAGCGGTGGCGACCGGTCGGAGACCATTGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGCAGAGAATGGAGAGAAGAAAGGGTTGGCAGCACTAAGAGATCAAGAAGGGGATGAGAGCACTGGAAGTGAGATTACTCTTAAATTCTAG 1389 0.4816 MSSQVELSMDYKPYSYSTLLKSYADETETDQTHKLEEFLSRLEEERVKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFMPIKHPNSQESTEKTSNISDKANWMTSAQLWSQASEGTKPQSTITSPKNGADMGFSVSPNPALDNKHRNGGAFLPFSKERNSCQGLRDLPEVALASSEKEMEKKCELESEKCSKRENSGKGSGSCEGVVDQGKSASVASEAQTTNTTITTTTNNTTGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLQTGAPTPQLVVFGGIWVPPEYARAAAHSGGPTLCGPHPTSHVPPPHYCAPTPMPQEFYNSAPSLSLPSPAHENILHHHHFHMYKTAPQTRSSPVSDVRSGGDRSETIEDGKSESGSWKAENGEKKGLAALRDQEGDESTGSEITLKF* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1260 462 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 462 IPR044787 GO:0003700|GO:0006355
Gso4g1260 462 Coils Coil 60 80 - -
Gso4g1260 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Gso4g1260 462 MobiDBLite consensus disorder prediction 416 456 - -
Gso4g1260 462 MobiDBLite consensus disorder prediction 400 462 - -
Gso4g1260 462 MobiDBLite consensus disorder prediction 196 255 - -
Gso4g1260 462 Coils Coil 35 55 - -
Gso4g1260 462 MobiDBLite consensus disorder prediction 225 252 - -
Gso4g1260 462 Gene3D - 251 309 - -
Gso4g1260 462 SUPERFAMILY Homeodomain-like 249 310 IPR009057 -
Gso4g1260 462 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 462 - -
Gso4g1260 462 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Gso4g1260 462 MobiDBLite consensus disorder prediction 400 414 - -
Gso4g1260 462 Pfam Myb-like DNA-binding domain 254 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1260 Gso-Chr4 32332617 32335802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1260 1 462 G2-like Transcription Factor Family AT2G03500 50.104 2.10e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso4g1260 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1260 - - gmx:100815048 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1260 4 32332617 32335802 Gso6g1804 6 21347798 21351288 GST
Gso17g1007 17 9473261 9476690 Gso4g1260 4 32332617 32335802 PCT
Gso4g1260 4 32332617 32335802 Gso17g1007 17 9473261 9476690 PCT