Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1257 ATGAGTGAAACGTATAACTTGTGCCATAAAATAACCTTCTTTCGGTTTCTTCTTCCCATCTGGAATATCTGTCTTCTTCTTCCAACCTTCTCCCTTCTCCTAAGAGACAAAAACAAAGTGAAACTGGCTTGTGTGTGTTTTCCACAGAACTACACTGCCAAGTGTAAAATGAAGGATCCAGAGGAGCACCCAGTGAAGTCTAGAAGGCCTCTTCAGAAATCTGCAGAACGTAGAAGAAGGTGCAGGAGAAGGAGCCAGTGCAAGATAGAGAAAATGCAAGAAACGGAACTTGATTCACACCTTGGTTTCTCTTCTGCCACTTGCAAGAGTCTTGTGTTTCATCAAAGGCCTGGCTTTGGCCAACTTGGTACTAAGTGTGTCATCAAAGCTAACCACTTTCTTGCAGATATATCAGTTTCTGACTTGAGCCATTACAATGTTATAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAGGCTATCATAGCAGAGTTGGTGAGGCTTCACAGGAACACTGACTTAGCCACGAGGCTCCCTGTGTATGATGGAGGGAGAAACCTTTACACTGCCGGTTTGCTTCCTTTTACTTACAAAGTGTTCAATGTAACATTGAGTGTGGATGATGATGCTACCGGTGGTACCAGGGAAAGGGATTTTAAGGTGGTAATCAAGTTTGCAACTCGTGTCAGCATGCATCAGCTACGTGAGCTTCTTAGTGGGAAACAAGTGAACAATCCGCAGGAAGCGCTAAGTGTCTTTGACATTGTGCTAAGGGAGCTAGCGGCTCAGAGTTACGTGTCGATTGGGAGGTTTCTCTATTCTCCGGATGTAAGAAAACCACAGCAGTTGGGTGGTGGCCTTGAATCATGGAGGGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATCGATATGTCATCAATGGCTTTTATTGAACCACTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGACAAGATGTGCACTCAAAGTTGTTGTCGGATGCGGATCGTATCAAGATCAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTAGTTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGGCATGCAAGATAGTCGGAGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGATCTCATGTCAAAGGCCCCGCGAACAAGAGACAGACATTTTGCAGACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGAGAACAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAGCTCCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCGTGTATCAACTTCTCTCGAAGTGTACAGGAGAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCCGTGATTCCTATATATTCGGCAAGACCAGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGCTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGACAATAATGGCTCTCTCTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTTGTTAGTGATATTCCAACAATAATATTTGGAGCCGATGTAACTCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGACTGGTTTGTGCTCAGCCTCATCGAGAAGAACTCATTCAAGACCTTTTCAGATGCTGGAAAGATCCACAGAGGGGTGTAGTTTATGGTGGTATGATTAGGGAGCTTTTACTATCATTTAAGAAGGCAACAGGACAAAAACCATTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAGGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATTCGCAAGGCTTGTGCATCCTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTAGTTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTAGATTCTAAGATCTGTCATCCTTCCGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGACGAGAACAATTTCACTGCAGATGAAATTCAGTCTCTAACCAATAATTTGTGCTACACTTATGCAAGATGTACACGGTCTGTTTCAGTAGTGCCTCCAGCATATTATGCTCATCTAGCAGCCTACAGGGCTCGATTCTACATGGAACCTGATGTTGCTGAGATTACAAAACTGCGAGGAACAAGATTGAAAGAAGGGCCTGTTCGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTTATGTTTTACTGTTGA 2898 0.4262 MSETYNLCHKITFFRFLLPIWNICLLLPTFSLLLRDKNKVKLACVCFPQNYTAKCKMKDPEEHPVKSRRPLQKSAERRRRCRRRSQCKIEKMQETELDSHLGFSSATCKSLVFHQRPGFGQLGTKCVIKANHFLADISVSDLSHYNVIITPEVTSRKTSKAIIAELVRLHRNTDLATRLPVYDGGRNLYTAGLLPFTYKVFNVTLSVDDDATGGTRERDFKVVIKFATRVSMHQLRELLSGKQVNNPQEALSVFDIVLRELAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGQDVHSKLLSDADRIKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELVFPLDEQMNMKSVVDYFQETYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKISCQRPREQETDILQTIQQNNYENNPYAKEFGISIENKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSARPDQVKKALKYVHSAAIDKLDGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVAEITKLRGTRLKEGPVRPLPALKEKVKNVMFYC* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1257 965 Pfam N-terminal domain of argonaute 125 258 IPR032474 -
Gso4g1257 965 Pfam Mid domain of argonaute 517 594 IPR032473 -
Gso4g1257 965 ProSiteProfiles PAZ domain profile. 320 434 IPR003100 GO:0005515
Gso4g1257 965 Pfam Argonaute linker 1 domain 268 317 IPR014811 -
Gso4g1257 965 CDD Piwi_ago-like 478 928 IPR045246 -
Gso4g1257 965 SMART Piwi_a_2 608 929 IPR003165 GO:0003676
Gso4g1257 965 MobiDBLite consensus disorder prediction 58 78 - -
Gso4g1257 965 SMART PAZ_2_a_3 324 456 IPR003100 GO:0005515
Gso4g1257 965 CDD PAZ_argonaute_like 319 433 - -
Gso4g1257 965 Pfam PAZ domain 324 450 IPR003100 GO:0005515
Gso4g1257 965 PANTHER PROTEIN ARGONAUTE 10 68 964 - -
Gso4g1257 965 SUPERFAMILY Ribonuclease H-like 597 930 IPR012337 -
Gso4g1257 965 SMART DUF1785_2 267 319 IPR014811 -
Gso4g1257 965 Gene3D - 498 671 - -
Gso4g1257 965 Gene3D - 677 965 IPR036397 GO:0003676
Gso4g1257 965 Gene3D paz domain 314 438 - -
Gso4g1257 965 Pfam Piwi domain 609 928 IPR003165 GO:0003676
Gso4g1257 965 SUPERFAMILY PAZ domain 315 474 IPR036085 GO:0005515
Gso4g1257 965 Pfam Argonaute linker 2 domain 462 506 IPR032472 -
Gso4g1257 965 ProSiteProfiles Piwi domain profile. 608 929 IPR003165 GO:0003676
Gso4g1257 965 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 68 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1257 Gso-Chr4 32013288 32028454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1257 113 965 Eukaryotic Initiation Factors Gene Family AT5G43810 74.681 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1257 K11593 - gmx:100810235 1932.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1257 4 32013288 32028454 Gso6g1805 6 21487351 21504296 GST
Gso17g1005 17 9437225 9455110 Gso4g1257 4 32013288 32028454 PCT