Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1254 ATGGCTTCATCTTCCTCCAACGGCAGTTCCAGCGGAAGCAAGAGTTGGGACATCGACGGCGACCTCGCCGGCTTCGGCTATAAAGTCCGGTCATCGGAGCTGCAACACGTGGCAGAAAACATGGAGCGTTTAGAGAACGTGATGGACATTGTGAACTCATCAACCAACAACAATATATCTCAGCTTGCCTCCGACACAATCTTCTACAACCCCTCCGACATAGGTTCCTGGATCGACACGCTCCTCTCGGAGTTCGACCAAACGGCGTCGTTGCCATACGATTTCTCGGAGTTACCCGATCTCGACACGGATCAGATTCAAAACCTCAAACCAACGCTGGTAACAATGGAAGAAGACTCAGGGATAAGACTCGTTCACACGCTGATGACGTGTGCGGATTCCGTGCAACATGGCGACCTCCCTTTCGCGGGCTCCCTCATCGAGAACATGCAGGGGCTGCTGGCGCACGTGAATACCAACATCGGAATCGGTAAAGTCGCCGGATACTTCATCGATGCCTTGCGCCGCCGTATCTTTGCGCAAGGCGTGTTTCTAACGTCGTGTTCGTATCCGATCGAGGACGACGTACTCTACCACCACTACTACGAGGCCTGCCCTTACTTGAAGTTCGCGCATTTCACTGCGAACCAGGCTATTTTAGAAGCCTTCAACGGCCATGATTGTGTCCACGTGATTGACTTCAACCTCATGCAGGGGCTCCAGTGGCCCGCGCTGATTCAGGCCCTGGCGCTTCGGCCCGGTGGGCCTCCGCTGTTGAGGCTCACGGGAATTGGGCTTCCCTCGTCCGACAACCGCGACACGCTCCGCGAAATTGGGCTCAGGCTCGCTGAGCTGGCGCGGTCCGTGAATGTTAGGTTTGCATTTCGTGGCGTGGCGGCGTGGCGCCTTGAAGACGTGAAGCCGTGGATGCTGCAGGTGAATCCGAACGAAGCCGTGGCGGTTAACTCCATCATGCAGTTGCATCGGCTTCTTGCTTCGGACTCCGATCCAGCAGGTTCGGGCATCGAAACCGTGCTGGGTTGGATCCGAAGCTTGAACCCGAAGATTATTTCCGTTGTAGAACAGGAGGCGAATCATAACGAGGACATGTTCTTGGAGCGGTTCACGGAAGCGTTACATTACTACTCGACCGTTTTCGACTCGCTTGAAGCGTGTCCGGTCGAACCGGACAAGGCGCTTGCGGAGATGTACCTGCAGAGGGAGATATGCAACGTGGTGTGCTGCGAGGGACCGGCGCGAGTCGAGAGGCACGAGCCGCTGGATAAGTGGAGGAAGCGGCTCGGGAAAGCCGGCTTCAAGCCGCTGCATTTGGGGTCCAACGCGTACAAGCAGGCCAGCATGTTGTTGACTCTTTTCTCGGCTGAAGGGTATTGCGTGGAAGAGAATCAAGGATGCTTGACTTTGGGGTGGCATAGCCGCCCTCTCATTGCGGCTTCGGCTTGGCATGCCGCGCCGGTGCAGGACAGGGAAACGCTGCGTTTCGAGCAGTGA 1512 0.5635 MASSSSNGSSSGSKSWDIDGDLAGFGYKVRSSELQHVAENMERLENVMDIVNSSTNNNISQLASDTIFYNPSDIGSWIDTLLSEFDQTASLPYDFSELPDLDTDQIQNLKPTLVTMEEDSGIRLVHTLMTCADSVQHGDLPFAGSLIENMQGLLAHVNTNIGIGKVAGYFIDALRRRIFAQGVFLTSCSYPIEDDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGLPSSDNRDTLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVNPNEAVAVNSIMQLHRLLASDSDPAGSGIETVLGWIRSLNPKIISVVEQEANHNEDMFLERFTEALHYYSTVFDSLEACPVEPDKALAEMYLQREICNVVCCEGPARVERHEPLDKWRKRLGKAGFKPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWHAAPVQDRETLRFEQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1254 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 492 IPR005202 -
Gso4g1254 503 PANTHER OS05G0574900 PROTEIN 7 492 - -
Gso4g1254 503 Gene3D - 17 85 IPR038088 -
Gso4g1254 503 Pfam Transcriptional regulator DELLA protein N terminal 19 89 IPR021914 -
Gso4g1254 503 SMART DELLA_2 19 95 - -
Gso4g1254 503 ProSiteProfiles GRAS family profile. 115 489 IPR005202 -
Gso4g1254 503 Pfam GRAS domain family 124 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1254 Gso-Chr4 31808454 31810450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1254 18 488 GRAS Transcription Factor Family AT1G14920 47.674 1.26e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso4g1254 GRAS 8.1e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1254 K14494 - gmx:100805968 985.711