Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1238 ATGGAGGGAGGTGACGTTGGGCATTGGGTGTTGGAGTTCCTTCTCCGGGCTCGGTACCCAGTCGTTTCCAGTAACCTACTCAAGAAAGTCCTTCGAATAGTCCCACTTTCAGACTTTGATTCCAGGCTTCAGAAGACGCTTCTTCTCCGAACCCTTCAAGACCACTTGTTCGCTGTCTCTGTCCCCGAATCCGTTCTCGAAACCCTCGAGCTCCTCGAGGAACTTCACCGCCGCGACGACGGCGCTCTGATCACCGCCGCCGCCATGAGCGCCGCCTACTGCGCCATTGCGGTGGACTGCACTCTCAAGCACCTGCTGGTGGAACTCCACAACAACCCTGCCTACCTCGGCGCCGTGAACAGGATATGGCGTGGTAGGGTTCGGCACATGAGCGGTTCCAGGGAGGGCAGCCTTCTTCTCTCGCTGGAGTTGGAGCGGTGGAGAACCGACATCGAAACTTCCCTTCTGGACTCGTTGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGACGCCGTCGTCAAGCTCCGGGATTATTTGATGGAAGCATGGACCGATTTGGGCCCTTCGTTTCTCGAGCTAGCGGCGTTGGCGCAAATAAACAAAAATGCCCTAGCCGTGAATTACTTAGAGGATTCCCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCCTGCTGAGGAAGTGCATACCTCAACAGATGCCGAGGTCCAAAAGGTTGGGGAATGTGGATCTGTGGAGTTGCAAAAGTTGGCCGAGGATTCTCTACTTAATTCGTTGGAAGTGAATGAGGAGGCACCTATTGAAAGTAGAGATGCAGATGTACCTTGCCCACTTGTTATTAATAACAATAACAATGAGGCTGATCTGATGGAAAAAGATCAAACTTCTATCCCTCATAATCATGACCATAAGTCAAGTTTAATGGAAAGAAATAGTACCGCTCGCATTTATGAGTGGGACGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGCCCCAAGTGGAGAGAAGTTTCTCCATTGGATAAGTACAAACCTGCAAGCATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACCCTAAAGACCGCTGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATTCTAGATTCTCACAAGGATATATTTGAAGAGAGAACTGAAGTTGATTTAAAGGACAAGTGGAGAAACATGAGGGTGGTTGCTGCAGTTTGCAAGTCACTTTAG 1284 0.4922 MEGGDVGHWVLEFLLRARYPVVSSNLLKKVLRIVPLSDFDSRLQKTLLLRTLQDHLFAVSVPESVLETLELLEELHRRDDGALITAAAMSAAYCAIAVDCTLKHLLVELHNNPAYLGAVNRIWRGRVRHMSGSREGSLLLSLELERWRTDIETSLLDSLVRERLASIDTRRDAVVKLRDYLMEAWTDLGPSFLELAALAQINKNALAVNYLEDSQQPEREIEKCTAAPAEEVHTSTDAEVQKVGECGSVELQKLAEDSLLNSLEVNEEAPIESRDADVPCPLVINNNNNEADLMEKDQTSIPHNHDHKSSLMERNSTARIYEWDDSIDGLEDGTSDHATRFNLPSPKWREVSPLDKYKPASITKRRKVKKWSQLEEETLKTAVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMRVVAAVCKSL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1238 427 Pfam Myb-like DNA-binding domain 369 417 IPR001005 -
Gso4g1238 427 ProSiteProfiles Myb-like domain profile. 363 418 IPR001005 -
Gso4g1238 427 PANTHER MYB TRANSCRIPTION FACTOR 4 417 - -
Gso4g1238 427 CDD SANT_TRF 369 418 - -
Gso4g1238 427 Gene3D - 371 426 - -
Gso4g1238 427 PANTHER MYB TRANSCRIPTION FACTOR 4 417 - -
Gso4g1238 427 SMART sant 367 420 IPR001005 -
Gso4g1238 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 363 422 IPR017930 -
Gso4g1238 427 SUPERFAMILY Homeodomain-like 365 418 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1238 Gso-Chr4 30011076 30015084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1238 9 417 Single Myb Histone (SMH) Gene Family AT1G15720 27.913 2.89e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso4g1238 Myb_DNA-binding 5.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1238 - K11111 gmx:100811657 801.201