Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1234 ATGTCCATGGCCTCCACGACCAGGGACGAGTCCTCCGACAACGACAGCACCTGCTCCTCCATAACCCTCGCCGACTCCACCCGCAGCTGGCTCAGCACCTTCAGCTTCCGCCGCAGCAGCAGCAGCAACAGCAGCTCCCTCCCCCTCTGCGCCGCCGCCCCTGACACCACAAAGTCTGCATCATGGGAGGCCATGCGGCGCCTCCGCCTCGACACCGGCGGCATCGGCCTCGACAACTTCCGCCTCCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACAAAACTCCATGGTGGGACGGCCGCAGAGCCTCTACTACGCCATGAAGGTTGTGGACAGAGAAGCGCTGGCCGTAAGGAAGAAGCTGCAAAGAGCGGAGATGGAGAAGCAGATTCTGGCGATGATGGATCACCCCTTCTTGCCCACCCTATACGCTGCGTTTGATGCCTCTCATTACTCTTGTTTCGTTATGGACTTTTGCCCCGGTGGTGACTTGTTCTCTGCGCGCCAACGCCAACCAGGGAAACGCTTCACCATCTCATCCACCAAGTTTTATGCAGCTGAGACACTAGTGGCCCTGGAGTATCTCCACATGAAGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTGATAAGAGAGGACGGGCACATTATGCTTTCGGATTTTGATCTCTGCCTCAAATGCGACGTCGTTCCGAAGCTGCTGAGAAGCAAAACCAGTTCAGAAAGCAGTGTCAAGACCCGAAGGAGTTCAGCACCATCTTGTGTTGCAGCCCCCATGCACTCATGTTTCTCTGCCTCAAGCAAGAGAAAGAAAGTGGTCACAACAGCAATCATAAGGGAAAATATGGATGTTTATGAAGATCAAAGTCAGCACAAAGGCCATGATTATTGCACGTCCGGCCTTGGCGAACATGACACAGAGATAGTGGCAGAGCCCATCAATGCAAGGTCCAAATCCTTTGTGGGAACCCATGAATACTTGGCACCTGAAGTGATTTCAGGAAATGGACATGGGAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTTTTGTATGAGATGTTGTATGGGAGAACACCCTTCAAGGGTGAGAACAATGAGAAGACCCTTATGAACATTCTCAAGCAGCCCTTGGCATTTCCAAGGGTCTCTTCAGTGAGTAGTTCTAGCAAGGAGTTTGAGGAGATGGTGAAGGTTCAAGACCTCATCAGCAAGCTCCTTGTGAAGAATCCAAAGAAGAGAATCGGGTGCTGCATGGGCTCAGTTGAGATCAAGAGGCATGAGTTCTTCAAAGGGGTGAATTGGGCTCTCATTAGATCAGTTAGGCCACCTGAGGTGCCTGCTGAATTGAACAAGATTAGGAGTAGAGTTTCGTTACAGAAATTAAGCAAGAAAGACAAGGATCAACCATATCAGATTACTCATCATTTTGATTACTTTTAA 1467 0.5147 MSMASTTRDESSDNDSTCSSITLADSTRSWLSTFSFRRSSSSNSSSLPLCAAAPDTTKSASWEAMRRLRLDTGGIGLDNFRLLRRLGSGDIGNVYLCQIQNSMVGRPQSLYYAMKVVDREALAVRKKLQRAEMEKQILAMMDHPFLPTLYAAFDASHYSCFVMDFCPGGDLFSARQRQPGKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLIREDGHIMLSDFDLCLKCDVVPKLLRSKTSSESSVKTRRSSAPSCVAAPMHSCFSASSKRKKVVTTAIIRENMDVYEDQSQHKGHDYCTSGLGEHDTEIVAEPINARSKSFVGTHEYLAPEVISGNGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLMNILKQPLAFPRVSSVSSSSKEFEEMVKVQDLISKLLVKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVRPPEVPAELNKIRSRVSLQKLSKKDKDQPYQITHHFDYF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1234 488 Pfam Protein kinase domain 81 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1234 488 Pfam Protein kinase domain 326 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1234 488 Coils Coil 114 134 - -
Gso4g1234 488 PANTHER PROTEIN KINASE PINOID 2 3 488 - -
Gso4g1234 488 PANTHER FLIPPASE KINASE 1-RELATED 3 488 - -
Gso4g1234 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gso4g1234 488 ProSiteProfiles Protein kinase domain profile. 80 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1234 488 Gene3D Phosphorylase Kinase; domain 1 79 169 - -
Gso4g1234 488 Gene3D Transferase(Phosphotransferase) domain 1 306 459 - -
Gso4g1234 488 CDD STKc_phototropin_like 78 461 - -
Gso4g1234 488 SUPERFAMILY Protein kinase-like (PK-like) 62 465 IPR011009 -
Gso4g1234 488 Gene3D Transferase(Phosphotransferase) domain 1 170 237 - -
Gso4g1234 488 SMART serkin_6 80 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1234 Gso-Chr4 29584266 29587122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1234 13 488 AGC Kinase Gene Family AT2G26700 56.979 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso4g1234 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1234 K08286 - gmx:100787216 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0990 17 9260933 9263315 Gso4g1234 4 29584266 29587122 PCT
Gso4g1234 4 29584266 29587122 Gso17g0990 17 9260933 9263315 PCT