Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1232 ATGGATGGGAACAAGGACGACGCGTTGAAATGTTTGAGTATCGGCAAAGAGGCGTTGGAAAGCGGCGATCGGTCACGTGCGTTGAAGTTCGTAACGAAGGCACGTCGCCTCGACCCCACCCTCCCCGTCGACGATCTATTGTCCACGATAGACGCGGATGCAGGGGATCAGCCTGCCGCCGCGGAGGCGGCGGAGTCCACAAAGTCTCCCGATCATCCTTCTATCCGCCGGAGGGCTGCTGGGGCGGCCGCTGCCGCTCCAAAGGGGCCCTCGTCGGCCTCGTCCTCTTCGGCCTCATACACAGAAGAGCAAGTCTCAATTATCAGAGAGATAAAGAGAAAGAAGAACTTTTATGAGATATTGGGATTGGAGAAGACTTGCACTATTGAGGACGTGAGGAAGTCGTACAGGAAACTGTCTCTTAAGGTTCATCCCGATAAGAACAAAGCCCATGGGGCCGAGGAAGCGTTCAAGGCCGTTTCAAAGGCGTTTCAGTGTCTTAGTAATGAAGAGAGTAAGAGGAAGTATGATGTTTCGGGAGAGGATGAAGCGATCTACGAGCAGCGCACTGCAAGGCCGGCAGCCAGGGGTTATAATGGTTACTATGAAGCTGATATTGATGCTGAGGAGATATTCAGGAACTTCTTCTTTGGAGGAATGGCCCCTGCAGCCAATTTTGGAGGATTCAGTTTTGGACCAGCTGGGTTCAATGGGTTCAATGGTCATAGGCATGCTGCTGAACATGGTTCTGGTGGTTTTAATGTTCGCACATTAATTCAGTTACTGCCAGTGCTGCTGATTCTACTATTGAACTTTTTGCCTTCTTCGGAGCCCTTGTACTCGCTATCGAAGAGTTATCCTTATGAACATCGGTTTACCACACCCAAGGGTGTCAACTATTATGTCAAATCTACAAACTTTGTTCAGGAGTATCCCTTGGGGAGCGAGGAACGATCAAAAATTGAAGAAAGGGTAGAGAGGGAGTACTTCAGCATTCTCCGCCAGAATTGTCATTTTGAGTTGCAGCGTCGCCAATGGGGTTATATCCGGGAAACACCCCACTGCGATATGTTGCGGAAGTTTGAGGTGGTGAATTAA 1098 0.4991 MDGNKDDALKCLSIGKEALESGDRSRALKFVTKARRLDPTLPVDDLLSTIDADAGDQPAAAEAAESTKSPDHPSIRRRAAGAAAAAPKGPSSASSSSASYTEEQVSIIREIKRKKNFYEILGLEKTCTIEDVRKSYRKLSLKVHPDKNKAHGAEEAFKAVSKAFQCLSNEESKRKYDVSGEDEAIYEQRTARPAARGYNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGPAGFNGFNGHRHAAEHGSGGFNVRTLIQLLPVLLILLLNFLPSSEPLYSLSKSYPYEHRFTTPKGVNYYVKSTNFVQEYPLGSEERSKIEERVEREYFSILRQNCHFELQRRQWGYIRETPHCDMLRKFEVVN* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1232 365 ProSiteProfiles dnaJ domain profile. 116 180 IPR001623 -
Gso4g1232 365 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Gso4g1232 365 Gene3D DnaJ domain 112 226 IPR036869 -
Gso4g1232 365 CDD DnaJ 116 169 IPR001623 -
Gso4g1232 365 Pfam DnaJ domain 116 177 IPR001623 -
Gso4g1232 365 PRINTS DnaJ domain signature 118 136 IPR001623 -
Gso4g1232 365 PRINTS DnaJ domain signature 136 151 IPR001623 -
Gso4g1232 365 PRINTS DnaJ domain signature 152 172 IPR001623 -
Gso4g1232 365 SUPERFAMILY Chaperone J-domain 112 231 IPR036869 -
Gso4g1232 365 PANTHER AT29763P-RELATED 1 363 - -
Gso4g1232 365 PANTHER - 1 363 - -
Gso4g1232 365 SMART dnaj_3 115 172 IPR001623 -
Gso4g1232 365 MobiDBLite consensus disorder prediction 48 100 - -
Gso4g1232 365 Pfam Domain of unknown function (DUF1977) 274 345 IPR015399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1232 Gso-Chr4 29165456 29167161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1232 111 177 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.437 1.53e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1232 K09518 - gmx:100788812 655.21