Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1221 ATGGTGCAAACAAGGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCGGAAATTCGCCACCCTCTTCTCAAGAGGAGGGTGTGGCTAGGCACGTTCGAAACAGCAGAAGAAGCGGCACGAGCTTACGACCAAGCCGCGATATTGATGAGCGGGCGTAACGCGAAAACCAATTTCCCAATACTCCAAACCCCGGAGGGTGACCCAAAGACGACGCTAACACCCATCGATCACGAAACCTCATCATCGTCGACGACCACCTCGAAGGAACTGGAAGAGATTCTTCACGCCAAGCTCCGAAAGTGCGGGAAGCTTCCGTCCCCTTCCATGACCTGCCTGAGGCTCGACCCCGAGAATTCTCACATCGGAGTGTGGCAGAAGCGCGCCGGCCAGCGTTCCGATTCCAACTGGGTCATGATGGTTCCTCCCCTCGGAAAAAAAGGTGGTGCTAATGAAGGAGGTACTGGAGGAGATGCTTCTTGTTCTAACTCCTTTCCGTTCTCCGAGTGCGATCCGACCCCGCAAGTGGCAAGGCAGGAGCTTCTGAGGACGGAGATGGACGAGGAAGAAAGAATTGCGCTGCAAATGATAGAAGAACTCCTCAGCAGGAACTGCCCCACTAGCCCTTCATTCAATAACTTATATTAA 657 0.5373 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPILQTPEGDPKTTLTPIDHETSSSSTTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQRSDSNWVMMVPPLGKKGGANEGGTGGDASCSNSFPFSECDPTPQVARQELLRTEMDEEERIALQMIEELLSRNCPTSPSFNNLY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1221 218 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 215 - -
Gso4g1221 218 MobiDBLite consensus disorder prediction 149 172 - -
Gso4g1221 218 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gso4g1221 218 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 215 - -
Gso4g1221 218 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gso4g1221 218 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gso4g1221 218 MobiDBLite consensus disorder prediction 62 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1221 Gso-Chr4 28443679 28446517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1221 1 207 AP2-EREBP Transcription Factor Family AT1G15360 60.190 1.40e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g1221 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1221 - - gmx:100779921 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0965 17 9079961 9081499 Gso4g1221 4 28443679 28446517 PCT
Gso4g1221 4 28443679 28446517 Gso17g0965 17 9079961 9081499 PCT