Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1203 ATGGCCGAAGCAGAACACAACGATCCCACCTCGCCGGAGCGCGAGGTCCAAACCAAAAGCAACAAGAAGAAACTCCGCAAGAGGAAAAGGCCTCACAAGACCGAGCAGAAACGAGATGAGGACAAGAACGATGCTAACATTGATAGTGCCCAAACACAAACCGAAGATGAAGAAGAAGAACAAAAAGAAGAAGACACAAACAACTTCTCATCCGGAATCATGAGCACCGAGTCTTTCTCCTCTCTGGGCTTGTCCGAACCCACTTCCAAAGCCATTGCGGACATGGGCTTCCACCGTATGACTCAGATTCAAGCGAAGGCAATTCCGCCGCTTCTGACCAGGAAGGACGTTCTGGGCGCGGCGAGAACGGGTGCGGGAAAAACCCTAGCGTTTTTAGTTCCGGCGGTGGAGTTGCTGTACAGCATTCAGTTCACGCCTCGGAACGGGACGGGTGTTGTTGTGATATGCCCGACGAGGGAGCTGGCGATTCAGACGCACGCCGTGGCGAAGGAGCTGCTGAAGTATCACTCGCAGACGCTTGGGTTGGTGATTGGGGGTTCCGGGAGGAAGGGAGAGGCGGAGCGCATTGTGAAAGGGGTGAACCTGTTGGTGGCGACGCCAGGAAGGCTTCTCGATCACCTCCAGAATACGAAGGGGTTCATATATAAAAACTTGAAGTGCCTAATGATTGATGAAGCTGACAGGATATTGGAAGCAAATTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTCTCAGCTACCCAAACAAAGAAGGTCGAGGATCTTGCCCGCTTATCATTTCAGGCAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAACGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGGTTGGACTGTTTAAATATTCATGGAAAACAAAAGCAACATGCCAGGACTACTACGTTCTTCAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCAAAGGTTCCCGTGAAAGAATATGCGTTTGATCATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAATGTTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACACTCCATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCTAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTAGAAGGAAAGAGAAGATGA 1629 0.4561 MAEAEHNDPTSPEREVQTKSNKKKLRKRKRPHKTEQKRDEDKNDANIDSAQTQTEDEEEEQKEEDTNNFSSGIMSTESFSSLGLSEPTSKAIADMGFHRMTQIQAKAIPPLLTRKDVLGAARTGAGKTLAFLVPAVELLYSIQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQATPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNVMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVEGKRR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1203 542 MobiDBLite consensus disorder prediction 67 85 - -
Gso4g1203 542 Pfam Helicase conserved C-terminal domain 313 417 IPR001650 -
Gso4g1203 542 CDD DEADc_DDX18 88 285 IPR044773 GO:0003724|GO:0005524
Gso4g1203 542 Pfam Domain of unknown function (DUF4217) 459 519 IPR025313 -
Gso4g1203 542 MobiDBLite consensus disorder prediction 1 20 - -
Gso4g1203 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 467 IPR001650 -
Gso4g1203 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 439 IPR027417 -
Gso4g1203 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 283 IPR014001 -
Gso4g1203 542 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 229 237 IPR000629 -
Gso4g1203 542 CDD SF2_C_DEAD 298 428 - -
Gso4g1203 542 Pfam DEAD/DEAH box helicase 101 272 IPR011545 GO:0003676|GO:0005524
Gso4g1203 542 Gene3D - 294 538 IPR027417 -
Gso4g1203 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 34 523 - -
Gso4g1203 542 Coils Coil 47 67 - -
Gso4g1203 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Gso4g1203 542 MobiDBLite consensus disorder prediction 1 85 - -
Gso4g1203 542 Gene3D - 16 287 IPR027417 -
Gso4g1203 542 SMART helicmild6 337 418 IPR001650 -
Gso4g1203 542 SMART DUF4217_3 458 521 IPR025313 -
Gso4g1203 542 PANTHER RNA HELICASE 34 523 - -
Gso4g1203 542 SMART ultradead3 96 301 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1203 Gso-Chr4 25784955 25790751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1203 77 436 Eukaryotic Initiation Factors Gene Family AT3G13920 31.233 7.29e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1203 K13179 - gmx:100798290 1049.27