Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1198 ATGGAGCCCATGGACATCGTTGGGAAGGCCAAGGAAGACGCTTCTCTTCCTAAAGCGACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTGTCGAGTTTATAAACCTTGTCTCGTCGGAGTCCAACGAAGTCTGTAACAAAGAAGAAAGAAGGACGATTGCACCGGAGCACGTGCTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGTTGGAGACAATGCAAGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCAGACGCTCACCAAAGTTTAGAGAGCTAA 471 0.4713 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDAHQSLES* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1198 156 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
Gso4g1198 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Gso4g1198 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Gso4g1198 156 Coils Coil 115 135 - -
Gso4g1198 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1198 Gso-Chr4 25630388 25633856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1198 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 84.564 2.12e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso4g1198 CBFD_NFYB_HMF 7.9e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1198 K21751 - gmx:547635 300.827