Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1197 ATGGGTGGTAATAGAAGGAGGAGGCACCACTTCAGCAGAATCCATGCATTCTCTTGTGGAAAAGCTTCATTCAAAGGGGAGCATTCACTCATAGGAGGTCCTGGATTCTCAAGGATAGTGTACTGCAACGAAGCGGAACGAGGTGAGGGGAGTCTCGTGAGTTATGGTGACAACTATGTGAGTACTACTAAATATACAGTGGCCACTTTCCTGCCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTCCTTATCTGTGCAATTCTGTCTTTTTTCCCGGTTTCTCCTTACTCGGCTGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAAGAGGAAAAAGCAGGATATAGATATGAATAACAGAAAGGTTAAAGTGCACCGTGGAGAAGGCATTTTTGGCTATTCTAAATGGAAGGATTTGAAAGTTGGAGACATAGTAAAGGTTGAGAAGGATGAATTTTTCCCTGCCGATCTCATCTTACTTTCATCAAGCAATGACGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACTAATCTAAAAGTTAAACAATCACTTGAAGAAACTTCAAAGCTGCAAGAAGATTCAAGCTTTCAAAATTTCAAGGCTATCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCGTTTGTAGGCAGTTTGGAGCTTGAAGATCAATTGTACCCTCTTTCACCTCAACATCTACTGCTTAGGGACTCAAAACTAAGGAACACTGAGTTTATCTACGGTGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAACTCAACAGAACCTCCATCCAAGAGAAGCACAGTTGAGAAACGGATGGATAAGATCATCTACTTTCTGTTCTTGGTCTTACTTTTAATTTCTTTTATTGGTTCAGTTTTCTTCGGGATTGCAACCAGGGAGGACCTTGAAAATGGAGTTATGAAGCGATGGTACCTCAGACCAGATGACACCACAATTTACTTTGATCCAAAGAAAGCACCAGTTGCAGCAATGCTGCACTTCCTGACTGCACTTATGTTGTATAGTTACTTGATTCCAATTTCTTTGTACGTTTCCATTGAAGTCGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGATTTGCACATGTATTATGAGGAAACTGACAGGCCAGCACATGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTCATCAAGTGTTCTATTGCTGGGATTGCCTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGGAGAAAAGGAGTACCTACAGATCAGGAGTTGACAGAAGATGGCAATGTTCCAAAGTCTTCCATTAAAGGTTTTAACTTTATGGATGAAAGAATCATGAATGGAAATTGGATCAATGAACCTCACGCCAATGTAATCCAGAACTTTCTGCGGTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTGGATGATGAAATTGGTAAAGTTTCATATGAAGCTGAGTCACCTGACGAGGCAGCTTTTGTGGTTGCAGCAAGAGAACTTGGGTTTGAGTTTTATGAAAGGACACAGACAAATATTTCACTGCATGAGTTCAATCCTAGATCAGGCAAGACAACTGAAAGGTCGTACAAACTTTTGAATATATTAGAGTTTAGTAGTACAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAAACTGCTACTGTTTAGCAAAGGAGCAGACAGTGTCATGTTTGAACGACTTGCAAGGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTGAAGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCGTATCGTGAACTTGATGAAGAAGAGTACAATCTATTCAATGAAGAGTTTATGGAGGCCAAGAACTTAGTGAGTGCAGATCGGGAACAAATTGTGGAGGAAATATCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGTTACTGCAGTTGAAGATAAACTTCAAAATGGGGTTCCTGAGTGCATTGACAAGCTAGCGCAGGCAGGAATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATATTGGGTTTGCTTGTAGTTTACTAAGACAAGGAATGAAGCAAATTATAATTAGTTCAGACACTACAGAAACCAAATCACTCGAGAAAATGGAGGACAAGTCTGCTGCTGCAGTGGCAATTAAGGCAAGTGTTATTCATCAATTAGCGAAAGGAAAGGAATTACTTGCTGAATCTGATGAAAACTCTGAGGCATTAGCCCTTATCATTGACGGGAAGTCTCTCACTTATGCACTAGAAGATGATGTGAAGGACCTATTTCTTGAACTTGCTGTTGGCTGCGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACTGGTAGCACAACTCTTGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGGATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCCAGTGATATTGCCATTGCCCAATTTCGGTTTCTAGAGCGTTTACTACTTGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTCGGCTTCACCCTCTTCTTCTACGAGATCTATGCCTCGTTCTCAGGGCAAGCTGCATACAATGATTGGTATCTCTCCCTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTGCTAGACTATGCCTCAAGTTTCCATTATTATATCAAGAAGGTGTACAAAATGTCCTATTCAGCTGGAAACGGATCCTTGGCTGGGCTTTCAACGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAACGCAATGGAGAATCAAGCATTCCGTAAAGCCGGGGAAGTTGCTGATCTTGAAGTTCTTGGTGCCACCATGTACACATGTGTTGTGTGGGTGGTGAATTCCCAAATGGCATTATCCATCAGTTACTTCACTTACATTCAACATTTATTCATATGGGGTGGCATTCTTTTCTGGTACATATTCCTCTTAGTGTATGGAACCATGGACCCCTCTCTATCAACCACTGCCTATAAGGTCTTGATTGAAGCTTGTGCACCAGCACCATCTTACTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTCGCCTATGCTTCAATCCAAATGCGGTTCTTCCCTACTTTCCATCAAATGATACAGTGGATACGAAATGATGGGCAAACTACTGATCCAGAATACGTTAATATTGTGAGACAAAGATCAATAAGACACACGACAGTTGGGTTCACGGCTCGGTTTGAAGCATCACATAGTTCGGGAGCATCCAAGAGTATTCAAGTATGA 3570 0.412 MGGNRRRRHHFSRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNEAERGEGSLVSYGDNYVSTTKYTVATFLPKSLFEQFRRVANFYFLICAILSFFPVSPYSAVSNVVPLVVVVAATMGKEAVEDWKRKKQDIDMNNRKVKVHRGEGIFGYSKWKDLKVGDIVKVEKDEFFPADLILLSSSNDDAICYVETMNLDGETNLKVKQSLEETSKLQEDSSFQNFKAIIKCEDPNANLYSFVGSLELEDQLYPLSPQHLLLRDSKLRNTEFIYGVVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFLVLLLISFIGSVFFGIATREDLENGVMKRWYLRPDDTTIYFDPKKAPVAAMLHFLTALMLYSYLIPISLYVSIEVVKVLQSIFINQDLHMYYEETDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGIAYGQGVTEVERALARRKGVPTDQELTEDGNVPKSSIKGFNFMDERIMNGNWINEPHANVIQNFLRLLAVCHTAIPEVDDEIGKVSYEAESPDEAAFVVAARELGFEFYERTQTNISLHEFNPRSGKTTERSYKLLNILEFSSTRKRMSVIVRDEEGKLLLFSKGADSVMFERLARNGREFEEKTKQHIEEYADAGLRTLILAYRELDEEEYNLFNEEFMEAKNLVSADREQIVEEISEKIEKDLILLGVTAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTTETKSLEKMEDKSAAAVAIKASVIHQLAKGKELLAESDENSEALALIIDGKSLTYALEDDVKDLFLELAVGCASVICCRSSPKQKALVTRLVKIKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWYLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCINAMENQAFRKAGEVADLEVLGATMYTCVVWVVNSQMALSISYFTYIQHLFIWGGILFWYIFLLVYGTMDPSLSTTAYKVLIEACAPAPSYWLITLLVLVASLLPYFAYASIQMRFFPTFHQMIQWIRNDGQTTDPEYVNIVRQRSIRHTTVGFTARFEASHSSGASKSIQV* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1197 1189 Pfam E1-E2 ATPase 137 344 - -
Gso4g1197 1189 Gene3D - 694 897 IPR023214 -
Gso4g1197 1189 SUPERFAMILY Calcium ATPase, transduction domain A 137 284 IPR008250 -
Gso4g1197 1189 Pfam Cation transport ATPase (P-type) 529 618 - -
Gso4g1197 1189 Gene3D - 107 286 - -
Gso4g1197 1189 SUPERFAMILY HAD-like 419 912 IPR036412 -
Gso4g1197 1189 SFLD p-type atpase 406 908 IPR044492 -
Gso4g1197 1189 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1180 - -
Gso4g1197 1189 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1142 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gso4g1197 1189 Gene3D - 536 693 IPR023299 GO:0000166
Gso4g1197 1189 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Gso4g1197 1189 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 467 696 IPR023299 GO:0000166
Gso4g1197 1189 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1180 - -
Gso4g1197 1189 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Gso4g1197 1189 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1135 IPR023298 -
Gso4g1197 1189 SFLD Haloacid Dehalogenase 406 908 - -
Gso4g1197 1189 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 824 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso4g1197 1189 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Gso4g1197 1189 PRINTS P-type cation-transporting ATPase superfamily signature 743 753 - -
Gso4g1197 1189 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Gso4g1197 1189 CDD P-type_ATPase_APLT_Dnf-like 57 1017 - -
Gso4g1197 1189 Pfam Phospholipid-translocating P-type ATPase C-terminal 885 1136 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1197 Gso-Chr4 25552116 25558908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1197 10 1181 Primary Pumps ATPases AT1G68710 70.257 0.0 1796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1197 K01530 K14802 gmx:100797039 2315.42