Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1184 ATGGGTGCTGCATTATGTTTGGCAAATTGCAAGAAATCTTCAACTCCATTGTCATACTCGTCACTTATGTGTGGTCTTGTCATCCAACTTCGATCCATTTTGGTAGCCCTATTGAGGAGTTTATTAAATGGAAAACTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCCTATCATTGTCATATCAGTGCACATGCAACAACTTACAGAGAAGAATCAGATATTTACAATGACAATATTGTCAGGGAAATCACAGTCGAAGGGGTGGCTTGGAATATCATTCAAAAGCCTCCTGTTCAACAATTCAATTCCAGTAAAATGTTCAAATTATACAATGACTCTTGCTGCTCAATATGCTTCCAGGATTTTGAGGATGAAGAATTTGTGAGGACACTTCCAAAATGTGGCCACTTTTTTCACTTAGTTAATTTGGGACTCAACTCCATGGAGATCTCCAACATGTGGACGAATCCGTTTGACGTGTCTCTTAAGCATGGTGCAGCAGCAACTACAGGGCAAATCCGCAAAATGACACATGCAAAGAAAAACCATTGGGGTGACACTAGATATGATCTCAGAGCAATTGGGGCTTCGATAGGAAATATGTATGTGGGGGTCACCACCACAACATGGAGTTTGTAA 645 0.4031 MGAALCLANCKKSSTPLSYSSLMCGLVIQLRSILVALLRSLLNGKLFMEWICPAVAQAYHCHISAHATTYREESDIYNDNIVREITVEGVAWNIIQKPPVQQFNSSKMFKLYNDSCCSICFQDFEDEEFVRTLPKCGHFFHLVNLGLNSMEISNMWTNPFDVSLKHGAAATTGQIRKMTHAKKNHWGDTRYDLRAIGASIGNMYVGVTTTTWSL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1184 214 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 35 143 - -
Gso4g1184 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 149 IPR013083 -
Gso4g1184 214 Pfam RING-like zinc finger 117 142 IPR001841 -
Gso4g1184 214 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 35 143 IPR044523 -
Gso4g1184 214 SUPERFAMILY RING/U-box 109 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1184 Gso-Chr4 25278824 25286177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1184 34 142 C3H Transcription Factor Family AT5G66070 34.862 4.12e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1184 - - gsj:114410689 446.817