Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1174 ATGGAAGCTTGTACTGGGCTTTTTGCTGGTACCCCAAACAGCAATGAGCTTGTGGTCATTCAAGGACACGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTTTTGGGAGATGAGGATGAAGATGATGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCTACAAGGGAACATGACCCACGGAGATAGTGAAGGGAATTCTAAATCGAAACCAGTAGGTTTAGCAAAGGTGAATGGGGAGTTGCCCATATCTTCTCACAGTGTTGGAGAACCTGGTGCAAAGTTGGATGACAAGGAGAAAGTAGATGAGTGGATGTTGCACCAAGGCAATCTATGGCCTGAAACTGATGCCTCAGTTGATCCCGAAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTACCAGTACCATCCGGCAGACTCAGTCCTTACAGAATGATGGTTGTCGCTAGGCTCCTCCTTCTATTACTGTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTATGGTTCATATCTGTGACATGTGAAATCTGGCTCGCATTATCCTGGATGATTGATCAGCTTCCCAAATGGTTCCCCATTGATCGTGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACCAGAGAACAAGCCCAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAAAAATTTTCTGTAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAGATAGATTTTCTAAAAGATAAGCTTCAATCCACTTATGTGAAAGAACGCCGGACTATGAAGAGAGAATATGAGGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACTCCAAAGACCATCCTAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTCCAACACCACAACAAAGCTGGCGCAATCAATGCCATGCTTCGTGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTAAACTTGGATTGCAATCATTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGCCTTTGTACAGTTTCCACTGAGGTTTGACAGCCTCGATAGGAATGATCGTTATGCTAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATATTGGTTCAGCATGTATCTTCAGAAGGAAAGCCTTAACCGGCTTTGATTCTCCAAAGACTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGACGAGAATGGAGAGGAAGCAAGCATAACAGGTGAGGACAAGGAGCTATTGAAGTCAGAGATGAATGATGAAAATAAATTTGGGAAGTCCATACTTTTCATGAATTCTGCATTAGCAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGCACTGCTTAAAGAAGCTATTCATGTCATGAGTTCCAGATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGCTATGGATCCATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTGGTGGTTGGAGGTCTGTATATTGCATGCCAAAGAGAGATCCATTCAGGGGTACAGCTCCAATCAACCTCACTGATAGACTGAACCAGGTGCTAAGATGGGCAGTGGGATCGCTTCAGATCCTATTCAGCAGCCATTGCCCACTTCTATATGGAGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTCATTTATTGTATCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTCATCTTCATTGCGTTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTCATTGGAAGTGTGTCGGCGAACCTCTTTGCCCTTTTGCAAGGCATTATGAGAGCCCTGCCACTTGGTAGAGTCAACACAAACTTCAGCATTGTATCAAAGGCACCGGATGATGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAATCTCATTGGTATTGTGGCTGGCTTCACGGACGCCATAAACAGTGGTGAACATTCTTGGGGAGCTTTGCTAGGGAAACTCTTCTTTTCTTTATGGGTCGTTATCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTTTCCTTGGTTTGGGTCAGAGTTGACCCTTTTGTGTTGAAAACAAAAGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2922 0.4377 MEACTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVLGDEDEDDVDDIEHEFKHEEMLQGNMTHGDSEGNSKSKPVGLAKVNGELPISSHSVGEPGAKLDDKEKVDEWMLHQGNLWPETDASVDPEKAMKEPLSRKVPVPSGRLSPYRMMVVARLLLLLLFFQYRIFHPVPDAIGLWFISVTCEIWLALSWMIDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNSKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHNKAGAINAMLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIAFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYIGSACIFRRKALTGFDSPKTSKRPSMVQVHSKQDENGEEASITGEDKELLKSEMNDENKFGKSILFMNSALAEEGGVDPSSSQEALLKEAIHVMSSRYEDRTLWGYEVGLSYGSIAADTLTSLKMHCGGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSSHCPLLYGGRLKGLQRIAYINSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFALLQGIMRALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGALLGKLFFSLWVVIHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1174 973 Pfam Cellulose synthase 587 967 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso4g1174 973 Pfam Cellulose synthase 286 584 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gso4g1174 973 SUPERFAMILY RING/U-box 21 107 - -
Gso4g1174 973 MobiDBLite consensus disorder prediction 573 604 - -
Gso4g1174 973 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 428 575 IPR029044 -
Gso4g1174 973 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 275 382 IPR029044 -
Gso4g1174 973 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gso4g1174 973 MobiDBLite consensus disorder prediction 584 604 - -
Gso4g1174 973 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Gso4g1174 973 PANTHER CELLULOSE SYNTHASE 1 973 - -
Gso4g1174 973 Coils Coil 384 404 - -
Gso4g1174 973 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 973 - -
Gso4g1174 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gso4g1174 973 SUPERFAMILY Nucleotide-diphospho-sugar transferases 286 791 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1174 Gso-Chr4 24225089 24229948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1174 1 973 Cell Wall Biosynthesis AT5G17420 63.398 0.0 1349