Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1172 ATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACGTTCTCGAAGCGGAGGACCGGGTTGTTCAAGAAGGCTCAGGAACTTTCCATTCTCTGTGAAGCCGAGGTTGCCGTCATAGTTTTCTCCAACACCGGCAAGCTCTTCGAGCTTTCCAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTGCTGTAGCAGAAATTAAGACAGAAAATGAATTTCACTTATGGGTGAAGGCTAGAAAAGGAAGAAATGGTTTGAGCCTATGGTACAAAAAGAGCAAGACGGGAAATATTCAAGCTAATGAGCTACAGCTTAACAATCTGCCTATGTATCTCACAAGGATTGAGTTTGATGTCTCTTTGATTGGTAAACTTGAATCTGTTACCAAATTGTGGCAGGAAGATTCTAAGATGGTGGAGATTCTAAGAGAGGAAATTGCAGAGCTAGAAACAAAGCAATTGTATGTGTTCTGTCAATCTCTGGTGGGTAAGGATCTGACAGGATTGGGTTTAAAGGAATTGCAGAATTTAGAGCAGCAACTTAATGAGGGGTTATTGTCTGTCAAGGCGAGAAAGAACAATCTAGAGCAATCTAGAGTTCAGGAACAACGGGTTATGTTGGAGAATGAAACTTTGTGCAGACAGATTGAGGAGCTTCGGTGTTTGTTTCCACAATCAGAACGAATGGTCCCATTCCAATACCAACATACTGAAGGAAAGAATACTTTTGTAGATACTGGTGCCAGATATCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGGAGTTCAGACACATCATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGCCCCCAAGAAAGAAAACTTTGCAAATGA 915 0.4251 MGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCEAEVAVIVFSNTGKLFELSSSGMKRTLSRYNKCLGSTDAAVAEIKTENEFHLWVKARKGRNGLSLWYKKSKTGNIQANELQLNNLPMYLTRIEFDVSLIGKLESVTKLWQEDSKMVEILREEIAELETKQLYVFCQSLVGKDLTGLGLKELQNLEQQLNEGLLSVKARKNNLEQSRVQEQRVMLENETLCRQIEELRCLFPQSERMVPFQYQHTEGKNTFVDTGARYLNLANNCGNEKGSSDTSFHLGLPAGVQEEGPQERKLCK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1172 304 Pfam K-box region 155 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso4g1172 304 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 PANTHER MADS BOX PROTEIN 1 292 - -
Gso4g1172 304 Coils Coil 187 207 - -
Gso4g1172 304 MobiDBLite consensus disorder prediction 278 304 - -
Gso4g1172 304 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Gso4g1172 304 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gso4g1172 304 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Gso4g1172 304 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso4g1172 304 ProSiteProfiles K-box domain profile. 148 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso4g1172 304 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1172 Gso-Chr4 24089435 24095476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1172 1 235 MADS-box Gene Family AT3G57390 39.583 2.58e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso4g1172 K-box 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1172 - - gmx:100776732 495.738