Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1162 ATGGATGGATTAGGTTCGCCATCCCAGTGGCTGAGGGAGCTGAGATGGGACTCCCAGGGCTTAAATCCGATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAATAAAAAATTTGCCTGGTGTATATAAGTCTCTCAATCCATCAAAAACATCATTATCTTCTGAAGATATCCTTGTTCGGAAATACTTCTATAAACTGTGTCCATTTTTGAAGTTCTCATACCTGATCACAAACCATGCCATTGCTGAGGCCATGGAGTGCGAAAAGGTGGTTCACATTGTTGATCTTCACTGTTGTGAGCCAACTCAATGGATAGATCTTCTACTAACTTTCAAAAACCGTCAGGGAGGTCCACCCCATCTGAAAATTACAGGAATTCACGAGAAGAAAGAAGTATTAGACCAAATGAACTTTCATTTGACAACTGAAGCTGGGAAATTGGATTTTCCTTTGCAGTTCTATCCTGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTGCCTGTAAAGATAGGAGATGCTCTTGCAATCACTTCTGTTCTTCAGCTGCATTCTCTTCTTGCCACTGATGATGATATGGCAGGGAGGATCTCACCGGCTGCGGCAGCATCTATGAATGTGCAGAGAGCACTGCATATGGGTCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATACCTTGAGTCCTGATTCTGCTTTGTCACCGCTTTCCTTGGGTGCCTCACCTAAGATGGGGATCTTTCTCAATGCTATTAGAAAACTTCAACCAAAACTAGTAGTGATTACTGAACAAGAATCAAATCTGAATGGTTCCAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCTACTGTTATGAAAACATCAGTAGAGAGGCAAAAACTTGAGAGCAAGCTTCTTGGAGAGCAGATAAAGAACATCATTGCTTGTGAGGGTGTTGATAGAAAGGAGAGACATGAGAAACTCGAGAAATGGATTCGAAGACTTGAAATGGCTGGTTTTGAAAAGGTACCTTTGAGCTACAATGGGAGGTTAGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTCGAGAAGAGAATGATTGTTTACTTGTCTGCTGGAGTGACAGACCATTGTTTTCTGTATCAGCTTGGAGTTTTAGGAGATGA 1332 0.4092 MDGLGSPSQWLRELRWDSQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVTYFSEALGYRIIKNLPGVYKSLNPSKTSLSSEDILVRKYFYKLCPFLKFSYLITNHAIAEAMECEKVVHIVDLHCCEPTQWIDLLLTFKNRQGGPPHLKITGIHEKKEVLDQMNFHLTTEAGKLDFPLQFYPVVSKLEDVDFEKLPVKIGDALAITSVLQLHSLLATDDDMAGRISPAAAASMNVQRALHMGQRTFAEWLERDMINAYTLSPDSALSPLSLGASPKMGIFLNAIRKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMKTSVERQKLESKLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEMAGFEKVPLSYNGRLEAKNLLQRYSNKYKFREENDCLLVCWSDRPLFSVSAWSFRR* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1162 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 441 IPR005202 -
Gso4g1162 443 ProSiteProfiles GRAS family profile. 14 440 IPR005202 -
Gso4g1162 443 Pfam GRAS domain family 24 439 IPR005202 -
Gso4g1162 443 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1162 Gso-Chr4 22991450 22993182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1162 6 443 GRAS Transcription Factor Family AT1G50420 50.673 3.53e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso4g1162 GRAS 3e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1162 - - gmx:106798410 874.774