Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso4g1161 | ATGGGTGAACAATTGGGGCTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGGTTGGTGATCCGGGATTTCAAGACCAGTGATCCTTATGTTGTGCTCAAGCTAGGGAATCAGACCAAGGTAATTAATAGCTGCTTGAATCCTATTTGGAATGAGGAGCTGAATTTCACTCTGACAAAACCCTTGGGAGTTTCGAATTTGGTCCTTCAAAGAAAGACCGAAGAAGCTGCAATGGCCACCAAGAGGTTAAAGGAGTTGTTAGAAGCTCATAAATCTTCTAGCGAGACACTTCAGCTACCTTGA | 300 | 0.4333 | MGEQLGLLKVIVVQGKRLVIRDFKTSDPYVVLKLGNQTKVINSCLNPIWNEELNFTLTKPLGVSNLVLQRKTEEAAMATKRLKELLEAHKSSSETLQLP* | 100 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso4g1161 | 99 | Pfam | C2 domain | 7 | 66 | IPR000008 | - | |
| Gso4g1161 | 99 | SMART | C2_3c | 7 | 94 | IPR000008 | - | |
| Gso4g1161 | 99 | Coils | Coil | 68 | 88 | - | - | |
| Gso4g1161 | 99 | Gene3D | C2 domain | 1 | 91 | IPR035892 | - | |
| Gso4g1161 | 99 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 66 | IPR044562 | - | |
| Gso4g1161 | 99 | ProSiteProfiles | C2 domain profile. | 1 | 99 | IPR000008 | - | |
| Gso4g1161 | 99 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 11 | 1 | 66 | - | - | |
| Gso4g1161 | 99 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 69 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso4g1161 | Gso-Chr4 | 22982583 | 22984309 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso4g1161 | 1 | 62 | C2H2 Transcription Factor Family | AT4G05330 | 52.308 | 3.73e-15 | 67.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso4g1161 | - | - | gsj:114409531 | 190.66 |