Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1159 ATGGAGATAATGCTGGTAACCAGGGCAAACACAATGGAGAGCCAAAAAGTGCTTATGCTCATGATGTACACTACTCTCTTTTGCTTCATGGCCACTTTCTCTAGTCAACACACAGTTACTATTACTCTAAATCAGTCTCTCCAATTTAATGACACCCTCGTTTCTTTAGACGGAACCTTCGAAGCAGGATTTTTCAACTTTGAAAATTCAAGACATCAATATTTTGGTATATGGTACAAGAGAATATCAGCTAGGACTGTTGTGTGGGTTGCCAACAGAGATGTCCCAGTACAGAACTCAACAGCAGTTTTGAAACTTACTGATCAGGGAAATATCGTTATTCTTGATGGCTCCAGAGGCAGAGTCTGGTCCTCTAACTTATCAAGAATTGCAGGGAAACCAGTTATGCAGCTTTTGAAAACTGGAAACCTTGTTGTGAAAGATGGAGAGGGCACTAAGAACATCTTGTGGCAAAGCTTTGATTATCCTGGCAACACATTCCTCCCTGGAATGAAACTGAAAAGCAATTTAGTTACTGGTCCATATAACTATCTTACATCTTGGAGAGACACTGAAGATCCAGCTCAAGGAGAGTTTTCGTATCGCATCGACATTCGTGGCATGCCTCAACTGGTTACTGCAAAAGGAGCAACAATTTGGTACAGGGCCGGGTCATGGAATGGCTATCTTTTCACTGGAGTTTCTTGGCAGAGAATGCATAGATTCTTGAATTTCTCTTTTGAGTCCACTGACAAAGAAGTTTCTTATGAATATGAAACATGGAACAGTTCAATACTCACTAGAACTGTGCTCAATCCAATGGGAAGTTCAGAGCGTTTTCTATGGTCAGATGAAACACAAAGTTGGCTCACTATAGCCACCCGTCCTGTAGACGAGTGTGAATATTATGCAGTTTGTGGTGTTAACTCTAATTGCAACATCAATGATTTTCCAATATGTAAGTGCCTCCAAGGTTTCATACCAAAATTTCAAGCAAAGTGGGATTCGTCAGATTGGTCTGGTGGGTGTGTCAGAAGAATAAAATTAAGTTGTCATGGTGGAGATGGGTTTGTGAAATACTCAGGAATGAAGTTGCCAGACACGTCTTCTTCGTGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTAAAACATTGTGTTTGAGAAACTGCTCTTGTACTGCATATGCAAATTTAGATATCAGAGATGGTGGGAGTGGCTGCTTGCTTTGGTTTGATAACATTGTTGACATGAGAAATCACACAGACCGAGGACAAGAAATTTATATACGACTTGACATTTCTGAACTCTATCAGAGAAGGAATAAGAACATGAACAGAAAGAAGCTTGCAGGGATTCTAGCAGGACTTATTGCATTCGTTATAGGACTAACAATTCTTGTGTGGGCCACTTCCTCATTTATAAAAAGGATGAATCTAGGCAAGCCAGAAATTATAAAAAAGCTAATTCACTGGAAGCACATGAAAGAGACGGAAGAGAATGACATACAAACAATATTTGATTTTTCAACCATTGATATTGCCACAAATCACTTTTCTGACAGAAACAAGTTAGGAGAAGGTGGATTTGGACCGGTATATAAGGGAATATTGGAAGATGGACAAGAGATTGCAGTCAAGAGGCTTTCTAAAACTTCAAGACAAGGAACTGAGGAGTTTAAAAATGAAGTAAAGTTGATGGCAACTCTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTATGAGTTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGGTTTGAGATTTCACGCCATCAAATTTATTGCTTTAAGTTTGCTGTTGCCATCTTGTAGTTTCCATGCTAACGTTCAAACTGATTTTTCAGATACAATGCGAGGTAAATTACTAGATTGGACTAGGTGCTTTCAAATTATAGAAGGAATTGCTCGTGGACTTCTGTACCTTCATCAAGATTCTACACTAAGAATCATACATAGAGATCTAAAAACAAGCAATATTCTGCTTGATATCAATATGATTCCAAAGATATCAGATTTTGGTCTAGCTAGAACATTTGGAGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCAGAATATGTAGTGCATGGGTCTTTCTCAACCAAATCTGATGTTTTTAGTTATGGTGTCATCGTACTTGAGATAATTAGTGGGAGGAAGAATCGTGGATTTCGTGACCCTCACCATAATCATCTTAACCTTCTAGGCCATGTATGGAGACTATGGACTGAAGAAAGACCCCTGGAGTTAATAGATGACATGTTAGATATTGATACGACCATATCTTCAGAAATATTACGGCGTATTCATGTGGGTCTACTGTGTGTACAAGAGAATCCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTGATGTTAAATGGTGGAACGTTACTCCCAAAACCAAGACAGCCTGGGTTCTACACTGGAAAAGATAATACAATTGACACAGGATCGTGTTCAAAGCACCGTGAAAGGTGTTCAGTAAATGAAATTTCAATCTCATTGTTAGAGGCACGATAG 2607 0.3893 MEIMLVTRANTMESQKVLMLMMYTTLFCFMATFSSQHTVTITLNQSLQFNDTLVSLDGTFEAGFFNFENSRHQYFGIWYKRISARTVVWVANRDVPVQNSTAVLKLTDQGNIVILDGSRGRVWSSNLSRIAGKPVMQLLKTGNLVVKDGEGTKNILWQSFDYPGNTFLPGMKLKSNLVTGPYNYLTSWRDTEDPAQGEFSYRIDIRGMPQLVTAKGATIWYRAGSWNGYLFTGVSWQRMHRFLNFSFESTDKEVSYEYETWNSSILTRTVLNPMGSSERFLWSDETQSWLTIATRPVDECEYYAVCGVNSNCNINDFPICKCLQGFIPKFQAKWDSSDWSGGCVRRIKLSCHGGDGFVKYSGMKLPDTSSSWFNKSLSLEECKTLCLRNCSCTAYANLDIRDGGSGCLLWFDNIVDMRNHTDRGQEIYIRLDISELYQRRNKNMNRKKLAGILAGLIAFVIGLTILVWATSSFIKRMNLGKPEIIKKLIHWKHMKETEENDIQTIFDFSTIDIATNHFSDRNKLGEGGFGPVYKGILEDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFGLRFHAIKFIALSLLLPSCSFHANVQTDFSDTMRGKLLDWTRCFQIIEGIARGLLYLHQDSTLRIIHRDLKTSNILLDINMIPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYVVHGSFSTKSDVFSYGVIVLEIISGRKNRGFRDPHHNHLNLLGHVWRLWTEERPLELIDDMLDIDTTISSEILRRIHVGLLCVQENPENRPNMSSVVLMLNGGTLLPKPRQPGFYTGKDNTIDTGSCSKHRERCSVNEISISLLEAR* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1159 868 SMART serkin_6 518 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1159 868 Pfam D-mannose binding lectin 86 189 IPR001480 -
Gso4g1159 868 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 635 867 - -
Gso4g1159 868 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 605 - -
Gso4g1159 868 PIRSF SRK 10 868 IPR024171 GO:0004674
Gso4g1159 868 Gene3D Phosphorylase Kinase; domain 1 491 593 - -
Gso4g1159 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Gso4g1159 868 Pfam Domain of unknown function (DUF3403) 826 868 IPR021820 GO:0004674
Gso4g1159 868 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 194 IPR036426 -
Gso4g1159 868 SMART blect_4 44 163 IPR001480 -
Gso4g1159 868 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 30 605 - -
Gso4g1159 868 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 635 867 - -
Gso4g1159 868 CDD B_lectin 44 163 IPR001480 -
Gso4g1159 868 Gene3D - 32 160 IPR036426 -
Gso4g1159 868 SMART ntp_6 352 431 IPR003609 -
Gso4g1159 868 Pfam Protein tyrosine and serine/threonine kinase 522 819 IPR001245 GO:0004672|GO:0006468
Gso4g1159 868 SUPERFAMILY Protein kinase-like (PK-like) 505 826 IPR011009 -
Gso4g1159 868 Gene3D Hepatocyte Growth Factor 348 430 - -
Gso4g1159 868 Pfam S-locus glycoprotein domain 221 329 IPR000858 GO:0048544
Gso4g1159 868 Pfam PAN-like domain 351 417 IPR003609 -
Gso4g1159 868 ProSiteProfiles PAN/Apple domain profile. 351 432 IPR003609 -
Gso4g1159 868 ProSiteProfiles Bulb-type lectin domain profile. 38 159 IPR001480 -
Gso4g1159 868 ProSiteProfiles Protein kinase domain profile. 518 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1159 868 Gene3D Transferase(Phosphotransferase) domain 1 631 826 - -
Gso4g1159 868 CDD PAN_AP_plant 348 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1159 Gso-Chr4 22385710 22389746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1159 451 836 Receptor kinase-like Gene Family AT4G23190 48.485 1.63e-115 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso4g1159 PK_Tyr_Ser-Thr 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1159 - - gmx:100819820 1743.01