Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1143 ATGAAGTATGAAGCTTGCCTTCCAAGTAACATAAAAAAGCCAAAACCAAATTCATCCATTGAGGAGCGCTCTGATTTTATTAGGAGAAAATATGAGTTTCTACAGTTTTTGGATATTGAAGAAAATTTGTCCTGTCCCTTTGTACCATCTCATGCAAGATGTTCATCATATTCCCAGCGTAGTTCCTCGAGCAACAACTTCCCACAAGACAAAAAACATTATGATAAACAAGAAACTAAAAGTCTTATTGGGAGCACATTTCGAAATAGTTGGGGAAGAAAAGATTCTGAGCATAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTATTGGGTTGATCAAGGTGAATGTGGTTAAAGGCACTAACCTTGCTATCCGGGATGTAATGACTAGTGACCCTTATGTCATCATATCTCTAGGTCACCAATCAGTGAAGACACGTGTCATAAAAAGTAGTTTAAACCCAGTTTGGAACGAAAGCCTAATGTTGTCAATTCCGGATAACATTCCTCCTCTTAAAGTGCTTGTGTATGACAAGGATATTTTCTCAACGGATGATTTTATGGGAAAGGCCGAAATTGACATTCAACCTCTAGTTTCCGCTGCAAAGGCATATGAAAAATCTTCAATCAATGATTCCTTGCAGCTTGGAAAATGGGTAGCAAATGGTGACAACAACACTCTTGTTAAAGATGGTACCATCTCCCTTGAAGATGGGAAGGTCAAGCATGATATCTCAGTGAGACTACAACATGTTGAGAGAGGAGTGCTAGAGATTGAACTCGAATGTGTTCTTCTAACTCAATAG 819 0.3858 MKYEACLPSNIKKPKPNSSIEERSDFIRRKYEFLQFLDIEENLSCPFVPSHARCSSYSQRSSSSNNFPQDKKHYDKQETKSLIGSTFRNSWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDVMTSDPYVIISLGHQSVKTRVIKSSLNPVWNESLMLSIPDNIPPLKVLVYDKDIFSTDDFMGKAEIDIQPLVSAAKAYEKSSINDSLQLGKWVANGDNNTLVKDGTISLEDGKVKHDISVRLQHVERGVLEIELECVLLTQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1143 272 MobiDBLite consensus disorder prediction 58 79 - -
Gso4g1143 272 Pfam C2 domain 116 206 IPR000008 -
Gso4g1143 272 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 272 - -
Gso4g1143 272 CDD C2_ArfGAP 114 259 - -
Gso4g1143 272 Gene3D C2 domain 113 265 IPR035892 -
Gso4g1143 272 MobiDBLite consensus disorder prediction 1 21 - -
Gso4g1143 272 Gene3D Arf GTPase activating protein 1 44 IPR038508 -
Gso4g1143 272 ProSiteProfiles C2 domain profile. 94 213 IPR000008 -
Gso4g1143 272 SMART C2_3c 116 211 IPR000008 -
Gso4g1143 272 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 112 207 IPR035892 -
Gso4g1143 272 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 272 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1143 Gso-Chr4 20751297 20771794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1143 3 272 C2H2 Transcription Factor Family AT4G21160 43.704 6.65e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1143 K12486 - gmx:100804342 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1143 4 20751297 20771794 Gso15g1975 15 44452608 44464926 PCT
Gso4g1143 4 20751297 20771794 Gso11g2294 11 38850462 38856488 PCT
Gso15g1975 15 44452608 44464926 Gso4g1143 4 20751297 20771794 PCT
Gso11g2294 11 38850462 38856488 Gso4g1143 4 20751297 20771794 PCT