Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1138 ATGTCTACCGACACCTCCTTCCCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACACTCACTCCCCGCGATGACACGGACACCGACATAGCCTTCGCCGAGCGATGCGAAATCTTCGGCGAAGGGGGCGTTGTCGGGTTCCGGACCCAGAACGGCGTCGTTTTGGACCCGGTGCTCGATTCCTCGCAATGCGGCGACAGCGGCTCCAACAAGACGAAGAGGAGGAACAAGATTGGGATGGTGAACGGGAGCATGAGCGTGGTCCACCAGCTCCACGCTATGGTCACCCGCAAGTTCATCAAAATCGACGCTCGCGTGGTCTGCGTCGAGGCGCTTCCTAGGATTGTGGTGCTGGTTGATGTGTATGTCCCCGTTCAGGTGTGGAGTGGCTGGCAGTTTCCAAGATCGGGACCCGTCGCCGGCGCCATTTTTCACCATTTGAGCTGTGATTGGAACGAGAGAAGTTCAATGCTTTCATATCCAGACTATTGTAAGAAGACTCATGGAGAAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCCGTGGAAGAAATTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTTAAGACACTACCTGGTGTAGGAAAACGGCAGACATTTAATAGTTCCAAGATAATGCCTATGGATAACATTTGCAGATCAGGCATTTGGGAGTTATCTGATGATATTTTAACTAAAATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATTTAAGATCCTTGGCTGCTTCAGTAATGCCTTATACGAAGTTAAATCTGTTTCCTCATCAGAGGGAAGCAGTTGAGTGGATGTTGCATCGTGAGCAAAATGCGGAGCGTTTGCCACATCCTTTATTTGTAGTTCTCTCAACTGACGATGGCTTTAGTTTCCATGTAAATACTGTAACTGGTGAAATTGTCACCGGGGAAGCTCCCACCATCAAGGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGACCCGCCAAATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGCTATTACGAGATCAGTGGTAATAACATCACTGGTGTTACTACTTTGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGATTGACATATCCTGATCAGCAAATATCTAAACTTCACGATTCATGTTCCAGGGAAGAAAACAAATCACCTGTGGATGCATGTTTCAAGGAATATATGCATTCAAATCAGTTCACTAAGAGTTTGAGTCGCATAAAGAAAAGTCTACATTTCACATTTGAAGAGGAAGCTATGATTTTCAAGGAAAGAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATCAGATGTTACATCTCATGTATCTCAAAACAAGTTGCCCGGGAAGCCTAAAGGTGATCGTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGTAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAATACTGACCCTCTGTATCAAAGTTGCAGTGTCCCTGAACAATATTTTCATAATACCTGTAAGATAACACACTTGCCAGGGTTTCACATAAAAGGAACTTGTGGAGGTGAGGAACAAAATGTTTCTTTTTTCACAAGCGTGCTTAAGGAGCACTACTCTTTGATAAATTCTCAGACAAAGAAGGCCCTGATGTGGTTGGCTGAAATTTCAACTGACAACCTTGCAGGAATGGAAACAAATGGCATCAGGGGTCCTATTTTAAACATCTGTACTGCATCTAGTAGACATTTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGAGAAAGGTGTGTGCAAGTGGTACTACCCTCAACATCTTAACAATTTGACTTTTGATGTGTCTGCCCTTGGCATGGCTCTTCGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGCCAATTGCGGGTTTATGTTTGGACTGATCATCGAAAGCCATCTGTGCATTGTCTTGCATGGGATTACGATGTTGTCATAACTACTTTTAGTCGGTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTTTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAATTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATTCTAACAGGAACTCCAACGCCTTACACTCCTAACAGCCAACTTCATTTACAACCATTGTTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCGAAAGTCATGGGATGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTACATTTACTTCAAAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATGAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTACGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCTCATATTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTTTAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTTCAAAGTGATCTGGACCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGCTCATTACACCGTGTCGGCATCTGTTGTGCTTAGATTGTGTTTCTATAGACAATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGGCCCGACCTGAAAATCCTAAACCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCGTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAAATCAGGGACAAACTTCAATACAGAAAATATCATTGATGAGATGCATATTGAGAATAGTCTGCATAGAAGTGATGACAAATCATCAATTCAGACATGTTTTATGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTGGCCATGTTCCAGCATGATTCAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGAATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGATGCTGATAACTTTAGAAGATCACCAATTAAGGATGTTACTGAATCTGATGATGATAGTGGGGGACGAGGATATAGATCATTGCATGATTTTGCTGAAAGTAGTTATCTACTGAAACTTAGATCTGTGTATACTAATTTGGAACGTCCAGAAGGTGTTTGA 3948 0.4222 MSTDTSFPDHKLCGFLCAVLTLTPRDDTDTDIAFAERCEIFGEGGVVGFRTQNGVVLDPVLDSSQCGDSGSNKTKRRNKIGMVNGSMSVVHQLHAMVTRKFIKIDARVVCVEALPRIVVLVDVYVPVQVWSGWQFPRSGPVAGAIFHHLSCDWNERSSMLSYPDYCKKTHGENESIWNLSDCHVLGCKLHSRGRNSSRKRLFELHEIFKTLPGVGKRQTFNSSKIMPMDNICRSGIWELSDDILTKILASLGPMDLTRVSATCHHLRSLAASVMPYTKLNLFPHQREAVEWMLHREQNAERLPHPLFVVLSTDDGFSFHVNTVTGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPNGAQVVWCQHNGNQKCGYYEISGNNITGVTTLGKRDVCQDTSRTNDNHDYSSKRARLTYPDQQISKLHDSCSREENKSPVDACFKEYMHSNQFTKSLSRIKKSLHFTFEEEAMIFKEREIGEGLIKAKHASDVTSHVSQNKLPGKPKGDRFEYSDTWIQCDACHKWRKLVDNSMANSSAAWFCSMNTDPLYQSCSVPEQYFHNTCKITHLPGFHIKGTCGGEEQNVSFFTSVLKEHYSLINSQTKKALMWLAEISTDNLAGMETNGIRGPILNICTASSRHFHKIFQAFGLLKRVEKGVCKWYYPQHLNNLTFDVSALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPYTPNSQLHLQPLLRFLHEESYGLNRKSWDAGVLRPFEAEMEEGRSRLLHLLQKCMISARKIDLQSIPPCMKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSDLDPTSGEYTSIRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSREARPENPKPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALRGTKSGTNFNTENIIDEMHIENSLHRSDDKSSIQTCFMSSTKTNLNPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQDADNFRRSPIKDVTESDDDSGGRGYRSLHDFAESSYLLKLRSVYTNLERPEGV* 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1138 1315 SUPERFAMILY F-box domain 230 272 IPR036047 GO:0005515
Gso4g1138 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 1292 IPR027417 -
Gso4g1138 1315 Pfam SNF2-related domain 284 918 IPR000330 GO:0005524|GO:0140658
Gso4g1138 1315 Gene3D - 514 573 - -
Gso4g1138 1315 Gene3D - 1044 1297 IPR027417 -
Gso4g1138 1315 CDD SF2_C_SNF 1140 1247 - -
Gso4g1138 1315 CDD DEXDc_SHPRH-like 700 876 - -
Gso4g1138 1315 ProSitePatterns Zinc finger RING-type signature. 1013 1022 IPR017907 -
Gso4g1138 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 363 IPR027417 -
Gso4g1138 1315 Gene3D - 687 879 IPR038718 -
Gso4g1138 1315 SMART ultradead3 277 846 IPR014001 -
Gso4g1138 1315 SMART helicmild6 1155 1237 IPR001650 -
Gso4g1138 1315 SMART fbox_2 239 279 IPR001810 GO:0005515
Gso4g1138 1315 ProSiteProfiles Zinc finger CW-type profile. 521 572 IPR011124 GO:0008270
Gso4g1138 1315 Pfam Helicase conserved C-terminal domain 1136 1237 IPR001650 -
Gso4g1138 1315 PANTHER OS01G0952200 PROTEIN 35 1296 - -
Gso4g1138 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 875 IPR027417 -
Gso4g1138 1315 Pfam F-box domain 238 276 IPR001810 GO:0005515
Gso4g1138 1315 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1131 1283 IPR001650 -
Gso4g1138 1315 Pfam CW-type Zinc Finger 526 569 IPR011124 GO:0008270
Gso4g1138 1315 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 671 836 IPR014001 -
Gso4g1138 1315 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 35 1296 - -
Gso4g1138 1315 ProSiteProfiles F-box domain profile. 233 279 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1138 Gso-Chr4 20501243 20516984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1138 706 1257 RAD5 or RAD16-like Gene Family AT5G22750 25.338 1.01e-42 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso4g1138 SNF2_N 4.4e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1138 - - gmx:100779718 2701.39