Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1127 ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACCCCTTCTTCCCTTCACCACCAACACCAAGGCCAACCCATTTCAGAAAACCAGACTCACACTCACACTCCAAACCTTCCTTTGCCTTCTTCAGCAGCTTCTCTCAGTGTTGGCTTTGGAATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACAGCCTCATCAAAACAATGAGGTTCAAGAGTGTGGTGGTGGTGGTGCCAATAGTAACACTACCACCACCAATTATTGGAACCTCAAGATGTGCCAAGAAGTGAATAATCCTCCAAAGAAGGGTGTGATCAACGTGGCTGATCATGATGATGAGAAGGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCGTCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGTAACACTCACGTGAAGAGCACGTGGATCCCCTCCGTTCGCCGCCGCGAGCGCGAGATCACGGTGGCTTCCGGTGGCGGTGTTGGCGGCAATGGTGGTTGTAAGAGGCCAAGAGCTGTGGTGGGGTCATCTCAAAATGCCACTTCTCATAGTTCCAACTCTAATGCTACAACTCCTAAGAGCTTAGCTACTAGCTCTTTTCATCAAGATGCTAGCTTCAAGCAGTCTTTACCGGGTCATGTTCGTGCACCAGCAGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTCCAGATTAGTGGGCATGTGTTCAAAGGGTTTCTCTATGACCATGGTGTTGATGGGAAAACCGCAAATGTAGTCCCTTGTGTCTCGGAACTGCAGCTGGGAAACAATTGCAGTGGGAAGAACAGAGAATGTTCCTCTGCAATTGCAATTGGGGTTGCAAATAACAATGCATACCCTGCTTCTGCGAGTTGA 999 0.4915 MSMLGLRDLVLIAQTPSSLHHQHQGQPISENQTHTHTPNLPLPSSAASLSVGFGIFPLLTATPCVPQPHQNNEVQECGGGGANSNTTTTNYWNLKMCQEVNNPPKKGVINVADHDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGVGGNGGCKRPRAVVGSSQNATSHSSNSNATTPKSLATSSFHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKTANVVPCVSELQLGNNCSGKNRECSSAIAIGVANNNAYPASAS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1127 332 MobiDBLite consensus disorder prediction 203 224 - -
Gso4g1127 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 331 IPR007818 GO:0003700|GO:0006355
Gso4g1127 332 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 135 177 IPR006510 -
Gso4g1127 332 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 239 286 IPR006511 -
Gso4g1127 332 MobiDBLite consensus disorder prediction 17 43 - -
Gso4g1127 332 Pfam Domain of unknown function (DUF702) 135 287 - -
Gso4g1127 332 MobiDBLite consensus disorder prediction 186 224 - -
Gso4g1127 332 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1127 Gso-Chr4 19512940 19518172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1127 1 316 C2H2 Transcription Factor Family AT5G12330 39.157 5.76e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso4g1127 DUF702 9.3e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1127 - - gmx:100806835 656.366