Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1119 ATGGACACCAAGCTTCTAACAATCCGCACCCTCGTCTCATCCCTCAGTTCCTCCTCCGACCAAACCCGCCTGGCCGCCCTCCGCCACCTACGCCGCACCTCCGCCGAAGACCCCGCCGCTCGCCCCCTCATTTCCGCCGCAGGCGCCGTCCCTCTCCTCGCCTCCGCCCTCTACTCCCCCTCCCACCCCATCCAGGACCACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCCGACCGTCGCCCCCTCGCCGCCTCCCCCGCCCTCCCGGACGCCCTCGCCCACCTCCTCTCCCGCCACGCCACCTCCTCCGCTGCCTCCGCCGTCCAGTCCGCCGCCGCCACCCTCCACAGCCTCCTCGCCGTCGTCTCCGAGTTCCGCCCCATAATCACCTCTAAACCCGACATCATCCGGGCCCTCGTCGGTATAATCAGTCACTCTGATTCCCCGACGAGGTCCATAAAGGATGCCCTCAAGGCATGCTTTGGAGTAGCCCTCCACCCGCCGAGCCGGATTGTACTAATCCGGCTCGGCGCGGTTCCTGCGCTCTTCGCTCTCGTAGCCAAGGGCAAGGACGGAAATAGGAGGGCTGGCATAATCGAGGACGCCACTGCTGTGATCGCGCAGGTGGCGGCCTGTGAGGAGAGCGAGGAGGCGTTTCGGAAGGTGTCGGGGGTTTCGGTGTTAACGATGATGTTGAGTTCGGAGAGTGGGAGCTGCAGTTTGAGGACGAAGGAGAATGCTGTTGCGGCGTTGTTGAATTTGGTGAGGTGTGGGAGTGAGAGGGTTTTTCGGGAGGTTAGAGACAAAGTTGGGGGCTTGGATGGGATCGCGTACGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAAGCCGTGGCGTTTTTTAAGCTTTTGCTTGATGGTGGAAGCAGTGGTGAAGTTGTTCAAGATTTGTATCCCGTTGATCCAGAATCGGGTTCAAGCTGTAGTGGGTAA 978 0.6186 MDTKLLTIRTLVSSLSSSSDQTRLAALRHLRRTSAEDPAARPLISAAGAVPLLASALYSPSHPIQDHAAATLLNLSISDRRPLAASPALPDALAHLLSRHATSSAASAVQSAAATLHSLLAVVSEFRPIITSKPDIIRALVGIISHSDSPTRSIKDALKACFGVALHPPSRIVLIRLGAVPALFALVAKGKDGNRRAGIIEDATAVIAQVAACEESEEAFRKVSGVSVLTMMLSSESGSCSLRTKENAVAALLNLVRCGSERVFREVRDKVGGLDGIAYVQEHGSPKGKSKAVAFFKLLLDGGSSGEVVQDLYPVDPESGSSCSG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1119 325 Pfam Armadillo/beta-catenin-like repeat 40 76 IPR000225 GO:0005515
Gso4g1119 325 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 225 IPR000225 GO:0005515
Gso4g1119 325 Gene3D - 3 305 IPR011989 -
Gso4g1119 325 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 48 76 IPR000225 GO:0005515
Gso4g1119 325 SUPERFAMILY ARM repeat 7 304 IPR016024 -
Gso4g1119 325 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 306 - -
Gso4g1119 325 PANTHER U BOX DOMAIN-CONTAINING 2 306 - -
Gso4g1119 325 SMART arm_5 37 77 IPR000225 GO:0005515
Gso4g1119 325 SMART arm_5 167 212 IPR000225 GO:0005515
Gso4g1119 325 SMART arm_5 213 257 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1119 Gso-Chr4 19272414 19273391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1119 8 299 U-box Gene Family AT2G23140 31.293 1.70e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1119 - - gmx:100803111 562.762