Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1115 ATGGAGGATAATAATAATAATAATAACAAAGCAGAGAAGCAGCAAGATGATAGTAGCCACCACCCATCTCTCCTCCTTCCTAAACCTAATCATAGCACCATCAACAACATCAAGGAGGATCATCATCAGTCTCCAAGAAAATTAGCCATTGGTGGTGGTGGCGGTGGCAGTGGTGATAGGCTGAAGAGAGATGAGTGGAGTGAAGGAGCTGTGACAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCACAGAAACAGAGCCAAACTCAAAGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCAGCAAGAGCAAACTCCACCAAGTCACCAAAGACTCAGACACAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCCACCACTGCTGATGCCTCATCTTGGCCTTTGTATTCTCGCCTCGACGTTCTGCTCCGCGGGACGGGACTGATATCTTCTTCGCTGCCACCACCAATAGCAGCAACAGCGATAGCAGCACCATCTCAATCACCACATGCTACTATAAATAATAACCAGGCTTTGGTGTTGTTGGAGCCACCTTCACTGGCTGTGTTACAAGCACCTCCTTCTGTTGCTCCTCCACCAATTGCAATTGCACAAAACTCACATGGACCCAATGGTGTTGAAAGACTACTAGCCAAGGAAGATGGGATAGGAGCCAAGTCATCTGAGCAAGTATCTAACAAGAATCCAATGGACTCGGATAGTAGCACACCTGCTCTTTACAGTAAAAAAGACAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAACAACAACAAGAGGAGAAGGAATAATAATAATAATAATGAAGACGTGGAAATAGCAAAGAGCATCAGGTGGCTTGCAGAAGTGGTGGTGAGATCAGAACAAACAAGAATGGACACAATGAAAGAGATTGAGAGGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTTAAGAGAACTGAAATCATTGCCAATACCCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTGAGAATTGGAAGAAGTTAA 1095 0.4475 MEDNNNNNNKAEKQQDDSSHHPSLLLPKPNHSTINNIKEDHHQSPRKLAIGGGGGGSGDRLKRDEWSEGAVTTLLEAYEAKWVHRNRAKLKGHDWEDVAKHVSARANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDVLLRGTGLISSSLPPPIAATAIAAPSQSPHATINNNQALVLLEPPSLAVLQAPPSVAPPPIAIAQNSHGPNGVERLLAKEDGIGAKSSEQVSNKNPMDSDSSTPALYSKKDKVRCNKRKMKSENNNKRRRNNNNNNEDVEIAKSIRWLAEVVVRSEQTRMDTMKEIERMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1115 364 MobiDBLite consensus disorder prediction 1 19 - -
Gso4g1115 364 Pfam Myb/SANT-like DNA-binding domain 63 150 IPR044822 -
Gso4g1115 364 Coils Coil 259 286 - -
Gso4g1115 364 MobiDBLite consensus disorder prediction 234 286 - -
Gso4g1115 364 MobiDBLite consensus disorder prediction 1 64 - -
Gso4g1115 364 MobiDBLite consensus disorder prediction 235 253 - -
Gso4g1115 364 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 46 360 - -
Gso4g1115 364 Gene3D - 66 131 - -
Gso4g1115 364 Coils Coil 312 332 - -
Gso4g1115 364 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 46 360 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1115 Gso-Chr4 19059367 19062953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1115 53 179 Trihelix Transcription Factor Family AT3G14180 34.615 2.33e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso4g1115 Myb_DNA-bind_4 4.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1115 - - gmx:100799917 627.091