Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1108 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTTCTGCTCCACTGCGGGCACGGGTTCTGCAGAGAGTGTCTCTCGAGAATGTTTTCGGCGTCTTCGGACGCCACGCTGGCGTGTCCCAGGTGCCGCCACGTGTCCACCGTCGGAAACTCGGTTCAGGCGCTGAGGAAGAACTACGCGGTGCTCGCGCTACTCCAATCCGCCGCTGCCGCCGCCAACGGCGGCGGTGGAGGGCGGTCGAATTTTGATTGCGACTACACCGACGACGAGGAGGACGGTGACGGCGGTAGAGAGGATGAGGACGAGGAGGACGACGAGAAGCGGCGGCGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCCGGCGGTGGTTGCGCGCCGGTGATCGAGCTCGGCGGCGGCGGCGGCGGCGGCGGCGCGCACAATGACCTGAAGCTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGGGTGGAGATGTGGATGGCGGTGATCGGCGGTGGTGGCGGCGGCGAGGGAGGAGGAAGGCAGCGGTGCCGGCACAACGTGGCGGTGAAGAAGGTGGCGGTGGCGGAGGGGATTGATTTGGATTGGGTGCAGGGGAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGCAGGAATGTGTGCACTTTCCATGGCACAATGAGGGTGGAAGATAGTTTGTGTCTTGTGATGGATAGGTGCTATGGATCGGTTCAGTCTGAGATGCAGCGTAATGAAGGGAGGCTCACTTTGGAACAAGTTCTAAGATATGGAGCGGACATTGCACGAGGGGTTGTTGAGCTTCATGCTGCTGGAGTTGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATGCAAATGGTCACGCTGTGGTTTCTGACTATGGACTTGCTACAATTCTCAAGAAGCCTTCCTGTTGGAAGGCTCGACCGGAGTGTGACTCTGCGAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTCAAGAAATCATTGAATTTGTTTTGGGATGATGGAATAGGTATATCTTCTGAATCAGATGCGTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACTGGTGCCATTCCTTGGGCAGGTTTAAGTGCTGAGGAAATCTATCGAGCTGTCGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGTGTTGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGCTTGCAGTATTTCTCCGTCATTTGCAGGAAATACCACGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAAGGGCTCTGTGTCAAATGTGATGGAGCCTTCCCCAGTACCTGAAATGGAAGTTCCTCAGCAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGAGATACTGCAGGTGTTAGAGATCTTCTTGCAAAGGCTGCATCAGAAAATGGCAGCAACTACCTATCGTCGCTATTGGAAGCTCAAAATGCTGATGGTCAAACAGCTCTTCACTTAGCTTGTAGACGTGGTAGTGCAGAACTTGTTGAGACAATTCTGGAGTGTAGTGAAGCAAATGTTGATGTATTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGGTCCCCAGAATGTGTTTGTATCCTTATCAATAGAAATGCTAATGTGCGGTCACGATTGAGAGATGGTTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGTCAACCAGATTGTATGCGGGAATTACTATTAGCTGGAGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTTCTGCATAGAGCAATTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAATCTGACACCGTTGCACCATTGTGTGGCAATATGGAATGTTGCTGTTGTGAAGAGATGGGTGGAAGTTGCTACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGACCATGAAAATGAGGGGAGAGAACTGGTGCGGATATTGCTTGCAGCAGGAGCTGATCCATCTGCTCAAGATTCCCAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACTAATGACGTGGACTTGGTTAAGGTTATTTTAGGTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTTGATGCTGGAGCAGATTATAATTTGAAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCAAAAATGATTCGTGAAAATCTTGACTGGCTTATTGTTATGCTAATGAAGCCTGATGCTGACATTGAAGTTAGAAACCACAGTGGCAAGACACTACGTGACATTTTAGAGGCTCTCCCCCGAGAATGGTTATCTGAAGATCTGATGGAAGCACTCGTGAATAAGGGAGTTCATTTGTTTCCTACAATATTTAAAGTGGGAGACTGGGTGAAGTTTAAAAGATCTGTCACAACTCCAACACATGGATGGCAAGGTGCTAAACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGGTTCATGTTCTTGCAAATGAAGTCATAAAAGTTGTTCCATTGGATAGGGGACAACATGTACACCTGAAAGAAGATGTAAAAGAGCCTAGATTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCTGAGATGGAACGTGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCGACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCACGTTGCTCCTTTTAGGATTGGGGACCAGGTATGTGTTAAACGATCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGCGAGATTGAGAATGACGGTCTCTTAATAATAGAGATACCAAATAGACCCATACCATGGCAAGCTGATCCATCAGATATGGAGAAGGTGGAAGATTTCAAGCAGGTTGGAGATTGGGTAAGAGTGAAAGCTTCGGTGTCTTCTCCAAAATATGGATGGGAGGATGTTACCAGGACTAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTGTTGCTTTTTGTTTCAGAAGTAAGCCCTTTTCTTGCTCAGTCACTGATATGGAGAAGGTTCCTCCATTTGAGGTGGGCCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATATTGAAAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAACTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGGGTTCCGGGATTTGAAGTTGGGGATTGGGTACGGTCAAAACCAAGCCTGGGAACCAGACCAAGCTATGACTGGAATAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTTCGCAAAGGGAAGTGGATCACTCATTATACAGATGTTGAAAAGGTTCCTAGCTTTAAAGTTGGGCAATATGTTAGGTTCCGAACTGGTTTGGTTGAGCCAAGGTGGGGTTGGAGAGGAGCTGAGCCTGAATCTCATGGGGTTATAACTAGTATTCATGCTGATGGAGAAGTCAGGTTCGCATTTTTTGGTCTGCCAGGATTGTGGAGGGGAGATCCTTCAGACCTTGAGATTGAACAAATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAACTACAATGCAAATAATTGGAAATCAATTGGGCCAGGTAGTGTTGGTGTTGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGATTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGATTTGACAAACTCTTTGTTGGACAGAAGGTTAGAGTAAAACAATATGTAAAGCAACCAAGATTTGGATGGTCAGGGCATACACATGCTAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTCCGGATATATACACCAGCAGGATCCAAAACATGGGTCTTGGACCCATCAGAAGTGGAGGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTTAGGGTTAAAGCATCAATTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATTCAAGCATAGGGGTGGTGCATCGGATGGAAGACGAGGATCTGTGGGTGTCATTCTGTTTTACGGAGAGGCTATGGCTTTGTAAGGCATGGGAAATGGAATGGGTTAGGCCATTTAAAGTGGGGGACAAGGTAAGGATCAGAGACGGACTGGTGACCCCACGATGGGGATGGGGAATGGAGACACATGCAAGCAAGGGACAGGTTGTAGGGGTAGATGCAAATGGAAAACTGAGAATAAAATTCCGGTGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGGACTGA 4938 0.4793 MKIPCCSVCQTRYNEEERVPLLLHCGHGFCRECLSRMFSASSDATLACPRCRHVSTVGNSVQALRKNYAVLALLQSAAAAANGGGGGRSNFDCDYTDDEEDGDGGREDEDEEDDEKRRRNSRESQASSSGGGCAPVIELGGGGGGGGAHNDLKLVRRIGEGRRAGVEMWMAVIGGGGGGEGGGRQRCRHNVAVKKVAVAEGIDLDWVQGKLEDLRRASMWCRNVCTFHGTMRVEDSLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSAKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAVFLRHLQEIPRSPPASPDNGLDKGSVSNVMEPSPVPEMEVPQQNPNHLHRLVSEGDTAGVRDLLAKAASENGSNYLSSLLEAQNADGQTALHLACRRGSAELVETILECSEANVDVLDKDGDPPLVFALAAGSPECVCILINRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCALVILENGGCRSMAILNSKNLTPLHHCVAIWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHENEGRELVRILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILGAGVDVNIRNVHNSIPLHLALARGAKACVGLLLDAGADYNLKDDDGDNAFHIAAETAKMIRENLDWLIVMLMKPDADIEVRNHSGKTLRDILEALPREWLSEDLMEALVNKGVHLFPTIFKVGDWVKFKRSVTTPTHGWQGAKPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVVPLDRGQHVHLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDQVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKQVGDWVRVKASVSSPKYGWEDVTRTSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDMEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKILKIDMDGALNVRVTGRQNLWKVSPGDAERVPGFEVGDWVRSKPSLGTRPSYDWNSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAEPESHGVITSIHADGEVRFAFFGLPGLWRGDPSDLEIEQMFEVGEWVRLNYNANNWKSIGPGSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPSSHLERFDKLFVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWVLDPSEVEVVEEKELCIGDWVRVKASISTPTHHWGEVSHSSIGVVHRMEDEDLWVSFCFTERLWLCKAWEMEWVRPFKVGDKVRIRDGLVTPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADLALDED* 1646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1108 1645 PRINTS Ankyrin repeat signature 532 547 IPR002110 GO:0005515
Gso4g1108 1645 PRINTS Ankyrin repeat signature 728 742 IPR002110 GO:0005515
Gso4g1108 1645 ProSiteProfiles Protein kinase domain profile. 152 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1108 1645 Pfam RING-type zinc-finger 6 49 IPR027370 -
Gso4g1108 1645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Gso4g1108 1645 MobiDBLite consensus disorder prediction 456 489 - -
Gso4g1108 1645 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Gso4g1108 1645 MobiDBLite consensus disorder prediction 94 110 - -
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat region circular profile. 779 811 - -
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat profile. 531 564 IPR002110 GO:0005515
Gso4g1108 1645 SMART ring_2 6 51 IPR001841 -
Gso4g1108 1645 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1644 - -
Gso4g1108 1645 Gene3D Transferase(Phosphotransferase) domain 1 244 465 - -
Gso4g1108 1645 SUPERFAMILY Protein kinase-like (PK-like) 149 489 IPR011009 -
Gso4g1108 1645 Pfam Ankyrin repeats (3 copies) 511 593 IPR002110 GO:0005515
Gso4g1108 1645 Pfam Ankyrin repeats (3 copies) 715 810 IPR002110 GO:0005515
Gso4g1108 1645 Pfam Ankyrin repeats (many copies) 603 650 IPR002110 GO:0005515
Gso4g1108 1645 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gso4g1108 1645 SMART ANK_2a 668 699 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 706 741 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 746 775 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 565 594 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 531 561 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 812 847 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 633 664 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 779 808 IPR002110 GO:0005515
Gso4g1108 1645 SMART ANK_2a 600 629 IPR002110 GO:0005515
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat profile. 746 778 IPR002110 GO:0005515
Gso4g1108 1645 SUPERFAMILY RING/U-box 5 61 - -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 1139 1256 IPR040847 -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 938 1005 IPR040847 -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 1264 1385 IPR040847 -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 1391 1512 IPR040847 -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 1067 1131 IPR040847 -
Gso4g1108 1645 Pfam Mind bomb SH3 repeat domain 1521 1640 IPR040847 -
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat profile. 600 632 IPR002110 GO:0005515
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat profile. 779 811 IPR002110 GO:0005515
Gso4g1108 1645 Gene3D - 745 879 IPR036770 -
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat region circular profile. 531 553 - -
Gso4g1108 1645 Pfam Protein kinase domain 185 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1108 1645 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1644 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gso4g1108 1645 MobiDBLite consensus disorder prediction 80 135 - -
Gso4g1108 1645 Gene3D - 485 599 IPR036770 -
Gso4g1108 1645 Gene3D - 600 744 IPR036770 -
Gso4g1108 1645 ProSiteProfiles Ankyrin repeat region circular profile. 746 777 - -
Gso4g1108 1645 SUPERFAMILY Ankyrin repeat 526 854 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1108 Gso-Chr4 18476428 18506039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1108 223 479 MAP Kinase Kinase Kinase AT1G53570 25.379 3.05e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gso4g1108 Pkinase 1.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1108 K16279 - gmx:100782956 3274.57