Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1102 ATGGCATTCAGCGATAAGCAAAAGCAAGAAGAAGAAGAAGAACCGCACAGAATGGAAGAAGACGACGACGAAAGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGTGGGACGATTGGGAAGGAGAAGACGAAGGAGAGAGAGAATCTGAATTCGTGTGTCTATTCTGTGACTCCCGGTACAGTTCGTGCGGTTCCTTGTTCGACCACTGCGCCTCCCTTCACCGCTTTGATTTCCACACGATCAGAACAACTCTCAGCTTGGATTTCTATGCCTCCTTCAAGCTCATTAACTTCATCCGCTCTCGGGTGGCAGAGAACATATGTTGGAGTTGTGGATTAACATGCCAGTCCAACTGTGACCTTCAGAATCATTTGCATGATGTAGTTGACTTTAATGAGATAAAGACTTTGTGGAATGATGATAGGTATCTGATACCTTTCATGCAAGATGATTCACTGTTGTACAGTTTTGGTGATTGTGACGAAGACGGGGAAGATGAACATATTACTCGAATTGATGAAGATCTTATAAAGGATCTAATGAACATTGAAGAGAGTATCCATGACGATCAAGATCTTGTGAAAAAAGTGGTAGTTGATGATGACAAACATGAGATTGATTCTGTCTCTAATAATCATTTGAACAAGGCTAGTTCTTCAAAGAAACTTATTAATGGTAAGGACTCAAAAGGACATGTTTTGTGCAGTGATAAGGATCCAGAAGGACATTTGATGGTTAATTCTCAAAATCACATTGCAAAGCATATTAAGAAGATCAATGAAAGTTATTTTGGGTCTTACAGTTCATTTGGTATCCATCGAGAGATGTTAAGTGATAAGGTGAGAATGGATGCTTATGGCCAAGCGATTTTGAAGAATCCCTCTCTACTAAATAGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGAATTCTCAGCCTATTTTCAGCAAAAGCTGGTGCTTCAAGGGTTATTGCAGTTGAGGCTAGTGCCAAGATGGCAGCAGTAGCATCTCAGGTTGCAAAAGATAATGGTCTTTTGCTGAGTAAAAGCCAAAATGGAGTTGATGGCCTCCAAAAGGGAGTCATAGAAGTGGTTCATGGTATGGTTGAAGAGATTGATAAAACAGTTGAACTTCAACCTCGCAGTGTTGATGTATTGCTAAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCACGAGACCGGTGGTTGAAGCCTGGTGGTGCCATTCTTCCTGATACAGCAACTATTTTTGTTGCAGGATTTGGAAAAGGAGCCACAAGTCTTCCTTTTTGGGAAAATGTGTGTGATTTCGACATGTCTTGCATTGGGAATGAGCTTGTCATAGATGCTGCCCGAATTCCTATAGTTGATGTTGTGGACTCTCAAGATTTAGTTACCTGTTCTGCTATTCTTCAGTCCTTTGACTTGGCAACCATGAAGCCTAATGAAGTGGATTTCACTGCAACTGCTACTTTGGAATTGAAACCAAGTACTTCTGGAACATGCTGCTGGTGTTATGGTGTTGTCCTATGGTTTGATACTGGATTTTCAAGCAGATTCTGCCGAGAAACACCAGCCGTGTTATCCACATCCCCTTACATGCCAAGAACACATTGGTCACAAACAATCTTAACCTTTCAAGAACCTATTGCGATGGGATTTGGAAAAGAAAACAGGGGTAAACCAGAAGCAATTGGCACTGAGGTGTATCCTGCTGTGAAGATTGATTTACGTGTCAGCATTGTCCGTTCTACTGAGCATCGCAGCATTGATATATCCTTAGAAGCTGCTGGTGTTGGTCCTGACAGTCACAAACGCAGTTGGCCTGCTCAGCTTTTTAATCTGCAGTAG 1905 0.4178 MAFSDKQKQEEEEEPHRMEEDDDESEEEEEEEEEEEEEEEEEVWDDWEGEDEGERESEFVCLFCDSRYSSCGSLFDHCASLHRFDFHTIRTTLSLDFYASFKLINFIRSRVAENICWSCGLTCQSNCDLQNHLHDVVDFNEIKTLWNDDRYLIPFMQDDSLLYSFGDCDEDGEDEHITRIDEDLIKDLMNIEESIHDDQDLVKKVVVDDDKHEIDSVSNNHLNKASSSKKLINGKDSKGHVLCSDKDPEGHLMVNSQNHIAKHIKKINESYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNSAVVMDVGCGTGILSLFSAKAGASRVIAVEASAKMAAVASQVAKDNGLLLSKSQNGVDGLQKGVIEVVHGMVEEIDKTVELQPRSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGATSLPFWENVCDFDMSCIGNELVIDAARIPIVDVVDSQDLVTCSAILQSFDLATMKPNEVDFTATATLELKPSTSGTCCWCYGVVLWFDTGFSSRFCRETPAVLSTSPYMPRTHWSQTILTFQEPIAMGFGKENRGKPEAIGTEVYPAVKIDLRVSIVRSTEHRSIDISLEAAGVGPDSHKRSWPAQLFNLQ* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1102 634 Gene3D - 431 628 - -
Gso4g1102 634 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 274 575 IPR029063 -
Gso4g1102 634 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 32 633 - -
Gso4g1102 634 Coils Coil 16 43 - -
Gso4g1102 634 ProSitePatterns Zinc finger C2H2 type domain signature. 61 82 IPR013087 -
Gso4g1102 634 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 268 586 IPR025799 GO:0016274|GO:0018216
Gso4g1102 634 Gene3D Vaccinia Virus protein VP39 260 429 IPR029063 -
Gso4g1102 634 Pfam Methyltransferase domain 310 425 IPR041698 -
Gso4g1102 634 SUPERFAMILY beta-beta-alpha zinc fingers 39 178 IPR036236 -
Gso4g1102 634 MobiDBLite consensus disorder prediction 1 51 - -
Gso4g1102 634 CDD AdoMet_MTases 310 428 - -
Gso4g1102 634 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 32 633 IPR025799 GO:0016274|GO:0018216
Gso4g1102 634 MobiDBLite consensus disorder prediction 15 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1102 Gso-Chr4 18193547 18198782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1102 32 633 C2H2 Transcription Factor Family AT3G12270 55.769 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1102 K11436 - gmx:100781879 1165.6