Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1078 ATGGCTTTGAGGGTTATAGCAATTTCAGTGGTTTCTACAGTATTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTGTCTTTGGATAAACTTACATCAGATGGGCTAGTCGGCTGGAATCTAATTCACTTGGACAATGCCAGCCAAGACATTGAGTTGCCTTTGGGTTTGTACACCACCATAGGGCTACTGGTGAATTGCATGATCAATGTATTTATCCTTCTCAATCTTTGCCTCAAGGCTGTGTTTTTCACGGAGTTATATGCTTCTGAAACTCGTAAACTGGTTGAACGTCTCATTAATTATGTCATTTACAAGGGGATGTTTCTACCATTGATTGTGCCACCAACAATTTATCAAGCAGGCCTTTGGTCAACTTGGTTGACTGTGCTTTGTTCTTTGAAGATGTTTCAAGCTTTGGCTAGGGATCGTTTGGAACGGCTGAATGCATCTCCGGCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTTGTTTTCATGGTTGATGTTCTCTGGATAAGGTTTTGTCTGACAATATATCGAACACATGGGTCCTCTATGTATCTGTTATTATTCTTTGAGCCTTTCAGTATTGTTTTTGAGACCCTACAGGCCATTTTGATACATGGATTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGCAATGATTTCCGAACACCTAAACTGCTTGACATGTTAACTGCAGGTTCATTGTTGGAATTGAAGGGAATTCTCATTCGGAACTTGGGGTTTTTCTTAGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGTGGCTTCATGGCATGGCTTTCCATCTAGTAGATGCATTCATATTTCTAAATATACGTGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTATCAGGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCAATGACTAAGGCTAAAAGGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACATGCCGAAAGCCACTTTTTGCGGGTGTGCCTGAAAATCAAACAAACTCCGATGTGGGGACGATATCTAGTGATGAGCAACTTGCACGGCAAATAAGTGCTGGATTGGATCGGCCAAACTCTGCTAGGCATACCATGCCTGCAGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTCCTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTGGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCTATCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCGGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATACCGCGTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCATTTCTCCCCCTGGTGGAAGATTGCCAGAAAGAACTGGTAGTTTACATTTAAGGAATGCTTCACAGTCAGCTAATGATGATGTTGCAAATATACTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCGGATGACATGATATTCCAGGACTTGCAAAGGACAAATTCAGTCACGGTTACTGTGAATAATCTCCTCCAAATGTGA 1761 0.4265 MALRVIAISVVSTVLSFVGLQFCTDLSLDKLTSDGLVGWNLIHLDNASQDIELPLGLYTTIGLLVNCMINVFILLNLCLKAVFFTELYASETRKLVERLINYVIYKGMFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPAATPWTYLRVYSALLFVFMVDVLWIRFCLTIYRTHGSSMYLLLFFEPFSIVFETLQAILIHGFQLLDIWLHHSACNSNDFRTPKLLDMLTAGSLLELKGILIRNLGFFLDMATFFMALGHYLYIWWLHGMAFHLVDAFIFLNIRALLSAIINRIKGFIRLRIALGTLHAALPDATTEELRAYDDECAICREPMTKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGVPENQTNSDVGTISSDEQLARQISAGLDRPNSARHTMPAGLYPNQTLNTPEGVPWRGAGLDSGWWHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDTAWNLWPINPSQASASGSTISPPGGRLPERTGSLHLRNASQSANDDVANILAMAETVREVLPHIPDDMIFQDLQRTNSVTVTVNNLLQM* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1078 586 SUPERFAMILY RING/U-box 325 386 - -
Gso4g1078 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Gso4g1078 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Gso4g1078 586 MobiDBLite consensus disorder prediction 415 434 - -
Gso4g1078 586 SMART ring_2 338 379 IPR001841 -
Gso4g1078 586 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 586 - -
Gso4g1078 586 Gene3D - 545 585 - -
Gso4g1078 586 Pfam Ring finger domain 336 380 IPR001841 -
Gso4g1078 586 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 586 - -
Gso4g1078 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Gso4g1078 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Gso4g1078 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 386 IPR013083 -
Gso4g1078 586 CDD RING-H2_synoviolin 335 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1078 Gso-Chr4 17370750 17408120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1078 57 421 C3H Transcription Factor Family AT3G16090 27.411 2.57e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1078 K10636 - gmx:100819656 1188.33