Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1054 ATGGGGTCTATGGGTAACTCAAATCCAAATCCAAATCCATGGACTCCAAAGGATTGTTCTGAAGGAATTTGCAGCATCTATTGTCCTCAGTGGTGTTACAAAGTGTACTCTCCTCCCCCTCCAATTCTACTAGGTGATGGCGATGATGACCCTTCAGGCTTTGAATTCTCTCCTCTCATAGTTGCTGTGATTGGAATCTTGGCTAGCACTTTCATCTTGGTCACTTACTATACCATTATCTCAAGGTTCTGCAGGCGCAGAAACAACACCAATGATTCAACAGAAGACGATGGAAACAGCGAATTGGCTCGAGTTTCTTCTTCTGCCAATTCTGGCTTAGATGAGGCTCTCATCAAATCCATCACGGTTTGCAAGTACAACAAACGTGGTGGTTTGGTGGAAGGTCACGATTGTTCGGTTTGTTTGAGCGAGTTTGAAGAGAATGAAGACTTGAGATTGTTGCCCAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATACTTGGCTCAAGTCTCATGCCACTTGCCCTTTGTGTCGTGCTTCTGTCACCGCTTGTCCGAATCCGAATTCATCCATGGAACCGCCACCAAGAGTCATTGTTAATGCCTTGGAACACCAGCAAAGGAGTAACCATGTTGTTGTCGTTGTTGAGAGTTCCGAGGAACAAGAGAAGGTGGTTAGCTTTGATGCTCATACTTTGAGTGACGGTGAAGGGTATCACACATAA 729 0.4499 MGSMGNSNPNPNPWTPKDCSEGICSIYCPQWCYKVYSPPPPILLGDGDDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRRNNTNDSTEDDGNSELARVSSSANSGLDEALIKSITVCKYNKRGGLVEGHDCSVCLSEFEENEDLRLLPKCNHAFHLPCIDTWLKSHATCPLCRASVTACPNPNSSMEPPPRVIVNALEHQQRSNHVVVVVESSEEQEKVVSFDAHTLSDGEGYHT* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1054 242 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 233 IPR044675 -
Gso4g1054 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 186 IPR013083 -
Gso4g1054 242 Pfam Ring finger domain 137 180 IPR001841 -
Gso4g1054 242 CDD RING-H2_PA-TM-RING 137 180 - -
Gso4g1054 242 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 12 233 - -
Gso4g1054 242 SUPERFAMILY RING/U-box 132 187 - -
Gso4g1054 242 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gso4g1054 242 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1054 Gso-Chr4 16783408 16784744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1054 1 183 C3H Transcription Factor Family AT3G03550 53.589 5.92e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1054 - - gmx:102660020 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1054 4 16783408 16784744 Gso6g2555 6 47284868 47285891 GST