Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1049 ATGGCATCATCACACGTTTTGGAAGGTTGTCCCTCCGAAGCCTCTAGCATCTCTGCCACCTCGGAAGGCATTTCTCATAAACCAAGTGCTGAAGAAGAGAATAATCATGATGAGGTGGCAAAAATGAAGGAGAAGGGTGTCAAATCTGAACAATATCAAGCTTCCAATTCCAATTCCCGCATGGTGTTGGATTTTGTTAAGCTCTCCCAAGATGAATCAATTCGAGGGTCGAAAGTGGAATTGGATTTTTTCAATCCAATGAACTTGGGGGGTTCACCTTCTTCTAGGGTTAAAAACACCGAAGGAAGAGATGAGAACAACAATGAAGAGAAATCATCAGAGGCTAAGACTTTTTCTTGCAATTTTTGCAAGAAAGAGTTTTCTTCATCACAAGCCTTGGGAGGGCACCAAAATGCTCACAAGCAAGAGCGTGCTCTCGCAAAGCGTCGCCAAGGGATTGATGTTGGTGCTTTTAGAAACCCTCATTTTCTTTATTACCCTTATCACCCCGCACACTCCTTTTATGGAACATATAATAGGGCACTTGGGGTTAGAATGGAGTCTATGATTCACAAGCCTTCATATCCTTCATCATCACTAGGTTTTAGGTTTGGTCAAGGGTGGTCAAGATCACAAGAGATGCTAAACCCTTCTCTTGATAGATTGAGGATTGAGGGTTTGCATGCAAATAGTGGAATTAGGATCCTAGGGAGTGACACTAGTTTGAGGACAAAAGATGATTGTGGTACTATTGGACACAACATTCCATTCCTTGGAGAATCTTCTACAAATGTTGCTACCAAATCAAACCCAGCCCCATTGACTACCGTGGGTGGTGTTCATCTCAAGCAAGAAGCACGCTCTAGTCCTGATTCTTCTGATGAGATTGATTTATCACTTAAGCTTTAG 909 0.4246 MASSHVLEGCPSEASSISATSEGISHKPSAEEENNHDEVAKMKEKGVKSEQYQASNSNSRMVLDFVKLSQDESIRGSKVELDFFNPMNLGGSPSSRVKNTEGRDENNNEEKSSEAKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDVGAFRNPHFLYYPYHPAHSFYGTYNRALGVRMESMIHKPSYPSSSLGFRFGQGWSRSQEMLNPSLDRLRIEGLHANSGIRILGSDTSLRTKDDCGTIGHNIPFLGESSTNVATKSNPAPLTTVGGVHLKQEARSSPDSSDEIDLSLKL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1049 302 MobiDBLite consensus disorder prediction 1 56 - -
Gso4g1049 302 SUPERFAMILY beta-beta-alpha zinc fingers 115 145 IPR036236 -
Gso4g1049 302 PANTHER ZINC FINGER PROTEIN JAGGED 7 302 IPR045320 GO:0003700
Gso4g1049 302 MobiDBLite consensus disorder prediction 26 48 - -
Gso4g1049 302 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 7 302 - -
Gso4g1049 302 MobiDBLite consensus disorder prediction 88 115 - -
Gso4g1049 302 Pfam C2H2-type zinc finger 118 142 - -
Gso4g1049 302 MobiDBLite consensus disorder prediction 98 112 - -
Gso4g1049 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Gso4g1049 302 MobiDBLite consensus disorder prediction 9 25 - -
Gso4g1049 302 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gso4g1049 302 Gene3D Classic Zinc Finger 96 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1049 Gso-Chr4 16455994 16456902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1049 29 230 C2H2 Transcription Factor Family AT5G10970 35.610 3.46e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g1049 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1049 - - gmx:102661483 592.038