Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1047 ATGTTGATCATACACAGCGGTGATTGCAGCAAAAGAAGAATGGTTTATCAATGGTTTTTTATTATCAAATTCATGTGCCTTCTTTGCTTTGTTGCTGGTCAGAACAGTAGCAATACACAACCACTTGATTATAGATATGCTTGTTTGGACCAAACTTCTGTTCCTCCTTCTACTACATACCAAACCAATCTCGACGATTTGATCTCTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATGGAACTTCAGGTATTGATGAAAACATGGTTTATGGACTCTATCTTTGTCGTGGCGATGTGAACACCAGCCTTTGCCACTCATGTGTTCAAAACTCTAGCATATTGCTCAAGCAGCACTGCCCCAACACTGCCTCAGCTATTTTGTGGTACCCCTTTTGTCTTCTGAGGTACTCAAACCAGAATTTCTTTGGCAACCTCACCTTAACGCCTAGGATTCCGATGTTTGACGCCACGCAAAATTTTACTAGTGCTGGAGAGTTTGACAGTGATGCCAGGGTTTTGATGAATGGTTTAATACAAATGGGGTCAGAGGAACCCTTGATGTTTGGGACACATATGTTCAATATAAATGGCACTCAAAGAAGGTATGGTTGGGTACAGTGCAGCAGAGATATTACAACTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAAGATGTTGAGAATTGCTGTGAGGAGAAGAAGGTGTGGCGTGTCTTTTCTCCAAGTTGTATTGTGATGTATGAAACTCAGCCATTTTTTTTGAATGGAACTTCTGAGCCAACGCCTCAGCAAGACGAAGATGGGGATAACAGAAGGTGGTTGATTATAGTAATCATTTCTGTATCTGGAGTTGTGGTAGTAGCTCTATTGTCTATCAGCACATACTACTTCTGGTGTTTGAAATGGAAAAAAGCTATTCAAGAGGATGGACTAAATTCAATGTTTTCTCAAGATCAAACGGACAAGGAGGAGAGTATGAATGCTGACCTTCCTATGATGCCTCTGAGTACTATTCTAAAAAGTACAAATAATTTTTCTGATGAGCATAAACTAGGGAAAGGTGGATTTGGCCCTGTCTATAAGGGAGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGAGGAATTCAAAAATGAAGTAATATTGATAGCAAAATTACAGCATCGCAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTTCTTGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACTTATTTGATATGGAGAAGGGTGAACATCTGGAATGGAAAAACCGATTAAACATTATTAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCTAGGCTAAGGGTTATTCACAGAGACCTGAAAGCTAGTAACATTCTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAAGCAGGCAAATACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGCTTGTTTTCAGTAAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCAGTGGAAAAAGGAGTAGTAAATTCTATCTGTCAGACCAAGGCCAAAGCCTTCTCATATATGCATGGAACCTCTGGTGTGAGAGGAAAGGTTTGGAATTGATGGATCCAATAATAGAAAAGTCATGCGTACGTAGTGAAGTTCTGAAGTGTATGCACATTGGACTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAAAAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGAGTCTTTCCGTCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCTGTCACTGAACGCGAGTGTTCATCAAACACTTCTATGCATTACTCTGTCAATGAAGCAACAGTCTCTGAAGTGATACCAAGGTGA 2007 0.4011 MLIIHSGDCSKRRMVYQWFFIIKFMCLLCFVAGQNSSNTQPLDYRYACLDQTSVPPSTTYQTNLDDLISSLSSDSATSNGFGNGTSGIDENMVYGLYLCRGDVNTSLCHSCVQNSSILLKQHCPNTASAILWYPFCLLRYSNQNFFGNLTLTPRIPMFDATQNFTSAGEFDSDARVLMNGLIQMGSEEPLMFGTHMFNINGTQRRYGWVQCSRDITTEECRTCLSNMLEDVENCCEEKKVWRVFSPSCIVMYETQPFFLNGTSEPTPQQDEDGDNRRWLIIVIISVSGVVVVALLSISTYYFWCLKWKKAIQEDGLNSMFSQDQTDKEESMNADLPMMPLSTILKSTNNFSDEHKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEFMPNSSLDFHLFDMEKGEHLEWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQKQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKRSSKFYLSDQGQSLLIYAWNLWCERKGLELMDPIIEKSCVRSEVLKCMHIGLLCVQEDAADRPKMSSVVHMLASDTVSLSVPTRPAFSVGRAVTERECSSNTSMHYSVNEATVSEVIPR* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1047 668 SUPERFAMILY Protein kinase-like (PK-like) 334 638 IPR011009 -
Gso4g1047 668 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Gso4g1047 668 ProSiteProfiles Protein kinase domain profile. 350 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g1047 668 ProSiteProfiles Gnk2-homologous domain profile. 42 145 IPR002902 -
Gso4g1047 668 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Gso4g1047 668 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Gso4g1047 668 Pfam Salt stress response/antifungal 53 143 IPR002902 -
Gso4g1047 668 Pfam Protein tyrosine and serine/threonine kinase 353 621 IPR001245 GO:0004672|GO:0006468
Gso4g1047 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gso4g1047 668 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 665 - -
Gso4g1047 668 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 36 665 - -
Gso4g1047 668 CDD STKc_IRAK 356 621 - -
Gso4g1047 668 Gene3D Transferase(Phosphotransferase) domain 1 426 629 - -
Gso4g1047 668 Gene3D - 156 257 IPR038408 -
Gso4g1047 668 Gene3D - 42 145 IPR038408 -
Gso4g1047 668 SMART serkin_6 350 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1047 Gso-Chr4 16262089 16266442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1047 19 668 Receptor kinase-like Gene Family AT4G05200 40.762 2.88e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso4g1047 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1047 - - gmx:100798691 1333.16