Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1043 ATGAGCACAGCTCGAGAGGTAAAGCGCATGGATTCCATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATTTGTGCTTATAAAGCATATGACAGAATGGCACACATTAATGGAAAATTCATGGATAACAACATCAGATTTACTCTTGTGAATATTAGTTCAAATCTTTGGCTCACCATAAGGCTAGAAACATTAGGAGGCCTCATGATTTGGTTGATAGCAACATCTGCTGTCTTGCAGAATGCAAGAGCTGCAAACCAGGCAATGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTACTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATTCTGTTGAGCGTGTCGACACATACATAAATTTAGAAACTGAGGCTCCTGGTGTAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCGGAACTTCCTCCAGTGCTGCATGGATTGTCCTTTACAGTACCTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGGGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGGATTGTGGAACTTCAGAAAGGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGACTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAGAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTGCTAAGTCTAGCTAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGAAGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTCAATGCTGGCCGAGTCCTTGAATATAGTTCTCCAGAGGAACTCTTACAAAATGAAGGAACAGCTTTCTACAAGATGGTTCAAAGTACTGGACCTGAAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAAGACAGAGAATAACTCAAATGAATATAACAAGGAGTTGGAAAACCATGTGAGACAATTAGCTTCTTCTCGCTGGACTGCTGCTACTCAGTTTGCTATAGTTGCTACCCTTTCTTCATTAAGCCATCACCTTCAAAAGCCAAGTAGTGAAGACAATAAAGATATCCTTGATAAAACAAAGGATGCAATTATAACACTTCAAGAAGTTCTAGTGGGGAAGCATGATGAAGACATAGAAGAGACACTGTATAAATACCATATTCCTACAGATAGATGGTGGTCTACCCTCTGTAAAGTTATTGAAGGTCTTGCTCTCTTGAAGGGGTTGCCTCTAGACAACATTCAACATCTAGAACTTGATTTTGAAGGGAGATCTTTTGACTAA 1629 0.399 MSTAREVKRMDSITRSPVYAHFGESLNGLSSICAYKAYDRMAHINGKFMDNNIRFTLVNISSNLWLTIRLETLGGLMIWLIATSAVLQNARAANQAMFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELQKGKIIIDGCDISTFGLEDVRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWQALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVEVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLNAGRVLEYSSPEELLQNEGTAFYKMVQSTGPENAQYLCSLVFGKTENNSNEYNKELENHVRQLASSRWTAATQFAIVATLSSLSHHLQKPSSEDNKDILDKTKDAIITLQEVLVGKHDEDIEETLYKYHIPTDRWWSTLCKVIEGLALLKGLPLDNIQHLELDFEGRSFD* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1043 542 ProSitePatterns ABC transporters family signature. 302 316 IPR017871 GO:0005524
Gso4g1043 542 Pfam ABC transporter 182 330 IPR003439 GO:0005524
Gso4g1043 542 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 128 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso4g1043 542 CDD ABCC_MRP_domain2 163 383 - -
Gso4g1043 542 SUPERFAMILY ABC transporter transmembrane region 3 145 IPR036640 GO:0005524|GO:0016021
Gso4g1043 542 SMART AAA_5 191 384 IPR003593 -
Gso4g1043 542 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 420 - -
Gso4g1043 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 398 IPR027417 -
Gso4g1043 542 Gene3D - 149 401 IPR027417 -
Gso4g1043 542 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 399 IPR003439 GO:0005524
Gso4g1043 542 Gene3D ABC transporter type 1, transmembrane domain 1 146 IPR036640 GO:0005524|GO:0016021
Gso4g1043 542 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 2 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1043 Gso-Chr4 16135967 16147836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1043 163 399 Calmodulin-binding Proteins AT2G36910 32.780 4.90e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1043 - - gmx:100814859 1062.75