Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1019 ATGTCCCTCCTCAGCCGATTCTTCTACAAGCGCCCCCCTGACGGCTTACTCGAATTATCCGACAGAGTCTACGTCTTCGATTCCTGCTTCTCCACCGAGGCACTCCCGGAGGGAATGTACAGCCTCTACCTCCGCCAAATCATCTCCGACCTCCACGAGGACTTCCCGGAATCCACCTTCCTCGCCCTCAACTTCCGCGACGGCGACCACCGCAGCCGCTTCTCCCGCGTCCTCTGCGACCTCGACGCCACCGTCGTCGACTACCCAAAGCAGTACGAGGGATGCCCCCTCCTCCCCCTCTCCCTCCTCCACCACTTCCTCCGCCTCTGCGACTCCTGCCTCGCCGACCCCGCCGCCCTGATCCTCCTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTTGCCTTCCTCCTCGCCGCCTTCCTCGTCTTCCGCAAGGCCGCGCAGACCGGGGAGCGCCGGATTCTCGAGATGGTCCATAAAGAGGCGCCTAAGGGGTTGCTGCAGCTGTTGTCGGCGCTGAACCCGCTGCCGTCGCAGCTGCGGTATGTGCAGTATGTGGCCAGGAGGAACATTGGGGCGGAGTGGCCACCGCCGGAGAGGGCCCTGTCTTTGGACTGTGTTATTCTCAGAGGGATTCCTGGGTTTGATGGCGGGAATGGGTGCAGGCCATTGTTTAGGATTTTTGGCAGGAATTTGCTTAGTAAAGGGGGGCTTTCCACACAGATGATTTATAATATGCATAAGAAGAAGAAGAGTTTGAGGCACTATAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTTTTGGAGTGTGTCCATTTGGATTTGGATCTGGAGAGGGAAGTGATGATGTTTCGGGTGATGTTCAACACGGCGTTTATTCGGTCCAACATTTTGATGCTGAATGCTGAGAACTTAGACATTCTTTGGGATTCGAAGGAGCGGTATCCGAAGGGCTTCCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAAGCATAAGTCCTCCAAGGGCTCAGACGAGTATTTTAGATGGTGAGGTGAAAGGTGGATTGCCTATTGAGGCATTTTCAAGGGTTCAGGAACTTTTTAGTGGTGTAGAATGGGTTGAAAGTGGGGATGCTGCTGCTGTCTGGCTGCTCAAACAGCTTACAGTCTTAAATGATGCCAAAGAGCTTTCAAGGTTTCAAGGTAGAGGAAGTTGGTATTCATCACCCGCTGACTCTGACTCTGAAAATAATGAATCGAGCACTGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAAGTCTTATGCTGATCCTTCAAAATTATTGATATCTGACAACCCTGATTTGGTCCATTTAGCTTTTGAGAACAATGGTGGAGATTATGTAAATCTCACTTCAAGAACACCTGATCAGTCGTTGACTGATAATGTTTCATCACCTCATCATGCTCCAAGAAAGCAATATTCTCCTTGTTCCTCTCCACCATCACCTTCACCAGTTCCCGCTACTCAACCTTTTCCAATACCGGCACCACCACCTCCTACATCAAATATACAGCCAGATTTAGCTCCTCCCCCACCTCCACATCAGATAGATCAGAATGTGAACAATGCTTCTACATTTCCTTCACCTCCTCCTCCTCCTCCTCCTTTGGTTTCCAATACTCCTAGTCAACCTCCACCTCCTCCTCCTCCTCCTCCTTTGGTTTCCAATACTCCTAGTCAACCTCCACCTCCTCTAGGACCTGTACGAACAAGTTCAGCCCCACCGCCACCACCTCCTCCTCCAGGTCATGTACAAACAGGTTCAGCCCCACCACCTCCTCCACGATCTGTACAAACTGGTTCAGCTCCACTGCCTCCACCTCCAGAATCTGTACGAACAGGTTTGGTACCACCACCTCCTCCAGGTCCCGTGCGAATAGGTTCTGCCCCGCCTCCACCTCCACCTCCACCTCCACCTCCTCCGGGTCCTGTACGAACAGGTTCTGTCCCGCCACCACCTCCACCTCCTCCAGGTCCTGTACGAATAGGTTCTGTCCCACCACCACCTCCACCTCCTCCAAGTCCTTTACGAACCGGTTCTGTCCTGCCACCTCCACCTCCTCCTCCAGGTCCTATACGAACAGGTTCAGCCCCGCCTCCTCCTCCTCCTCCTCCTCCTCCAAGTCATGTACGAACAGGTTCAGCCCCACCACCACCTCCACCTCCTCCAGGTCCTGTACGAACAAGTTCTGTCCCACCACCACCTCCACCTCCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCACCTCCTCCTCCTCCTCCTCCAGGTCATGTACGAACAGGTTCAGCCCCACCACCACCTCCACCTCCTCCAGGTCCTGTACGGACAGGTTCAGCCCCACCACCACCTCCACCTCCTCCAGGTCCTGTACAAACAGGTTCAGCCCCACCACCTCCTCCTCCTCCTCCAAGTATACGAACAGGTTCAGCTCCACCACCTCCTCCTCCTCCTCCAAGTGTACGAACAGGTTCTGCTCCACCACCACCACCACCACCACCATTGGCACCAAAACCTCCAGGTGCTCCTCCTCCTCCACCTGGCCGTGGTACATCTCCAATGCCACCTCCACCACCTGCAGTTAGGGCCCCTGGTGTGGCACCACCACCAGGCAAAGCTTCAACAACAAATGTTGGAAGAGGTCGTGGTACTGGTGGTACTGTTAATGCTCCTAAGAAAACTTTGCTAAAACCCCTACATTGGGTGAAAGTTGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGGAACAAGGGCCCCTGAGATTGATATATCAGAACTTGAGAGCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGCAGTACTAAGGGTGGAGGACGACGTGGTCCTAATATTAACAAACCTGAGAAAGTACAATTGGTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCAGTCCTGGCATTGGATTCTGCAGTTCTGGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCTACAAAGGAAGAGATGGAGATGTTAAAGAATTATACAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTCATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCAACTTTTCTTCTCAGGTGAATGATTTGAAGTTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACCATTCTTACACTGGGCAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTCGCTGAGAAGATGCCAGAATTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTTGCTGCTTCTGAAAATGATGGTGCTATATCTACTGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCTCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTAGATGCCCTTTTGAACAAGTGACGCAAATCCTTGTTGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAGGCAGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCATTGAAGGAAAGGACAGCAAATAACTCGCTTTCCAAAAAAGATGGCGTTCGATAG 3960 0.498 MSLLSRFFYKRPPDGLLELSDRVYVFDSCFSTEALPEGMYSLYLRQIISDLHEDFPESTFLALNFRDGDHRSRFSRVLCDLDATVVDYPKQYEGCPLLPLSLLHHFLRLCDSCLADPAALILLHCERGGWPLLAFLLAAFLVFRKAAQTGERRILEMVHKEAPKGLLQLLSALNPLPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGIPGFDGGNGCRPLFRIFGRNLLSKGGLSTQMIYNMHKKKKSLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDLEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVESISPPRAQTSILDGEVKGGLPIEAFSRVQELFSGVEWVESGDAAAVWLLKQLTVLNDAKELSRFQGRGSWYSSPADSDSENNESSTADSSDEAFDVIPKSYADPSKLLISDNPDLVHLAFENNGGDYVNLTSRTPDQSLTDNVSSPHHAPRKQYSPCSSPPSPSPVPATQPFPIPAPPPPTSNIQPDLAPPPPPHQIDQNVNNASTFPSPPPPPPPLVSNTPSQPPPPPPPPPLVSNTPSQPPPPLGPVRTSSAPPPPPPPPGHVQTGSAPPPPPRSVQTGSAPLPPPPESVRTGLVPPPPPGPVRIGSAPPPPPPPPPPPPGPVRTGSVPPPPPPPPGPVRIGSVPPPPPPPPSPLRTGSVLPPPPPPPGPIRTGSAPPPPPPPPPPSHVRTGSAPPPPPPPPGPVRTSSVPPPPPPPPPGPVRTGSAPPPPPPPPGHVRTGSAPPPPPPPPGPVRTGSAPPPPPPPPGPVQTGSAPPPPPPPPSIRTGSAPPPPPPPPSVRTGSAPPPPPPPPLAPKPPGAPPPPPGRGTSPMPPPPPAVRAPGVAPPPGKASTTNVGRGRGTGGTVNAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELESLFSAASTSDGSSTKGGGRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSAVLDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKINFSSQVNDLKLNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKERTANNSLSKKDGVR* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1019 1319 ProSiteProfiles Formin homology-2 (FH2) domain profile. 906 1306 IPR015425 -
Gso4g1019 1319 Pfam C2 domain of PTEN tumour-suppressor protein 198 336 IPR014020 -
Gso4g1019 1319 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Gso4g1019 1319 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 338 IPR035892 -
Gso4g1019 1319 Gene3D - 196 341 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 468 912 - -
Gso4g1019 1319 Coils Coil 1085 1105 - -
Gso4g1019 1319 Gene3D Formin, FH2 domain 907 1292 IPR042201 -
Gso4g1019 1319 Pfam Formin Homology 2 Domain 911 1281 IPR015425 -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 958 973 - -
Gso4g1019 1319 Coils Coil 1281 1315 - -
Gso4g1019 1319 SUPERFAMILY Formin homology 2 domain (FH2 domain) 981 1308 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 1283 1319 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 495 536 - -
Gso4g1019 1319 Gene3D Protein tyrosine phosphatase superfamily 15 190 IPR029021 -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 406 430 - -
Gso4g1019 1319 SMART it6_source 437 1316 IPR015425 -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 468 491 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 958 981 - -
Gso4g1019 1319 PANTHER FORMIN-J 817 1310 - -
Gso4g1019 1319 PANTHER FORMIN-J 1 802 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 545 886 - -
Gso4g1019 1319 SMART PTEN_C2_2 197 1034 IPR014020 -
Gso4g1019 1319 Coils Coil 1187 1214 - -
Gso4g1019 1319 MobiDBLite consensus disorder prediction 406 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1019 Gso-Chr4 15023123 15034882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1019 1 470 FH2 protein (formin) Gene Family AT1G31810 67.585 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1019 - - gmx:100809152 1107.43