Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1018 ATGGGTTACGATTCGGATAGCCCCTCGCAAGATGGGAGGGACGAAGACGACGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCTGATAAGCTGGGTCCGTCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGGCTGTGACGTAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCCTCTGTATGTTTGGAATCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGATTCTGAAAAGGAGCAAGACTTTGTGAATGACAATTGTAAAGTTGATAACATCCCTTTAGCTGGGGAGCAGAAAGAGAGTTTTGTGGATGCATCTAAAGAAGAGAGTTCACTTGAACATGAATTACATGTTGACTCACCGCAGACTGAAGAATTGGATGCTGATGTACAAAAGCTTGAGGAGGAAAGCCCTGAAGTTCCGAAAAGGTCTATGGCTATGCCATTGCCTGTTTTATGTGTGGAAGATGGTGTGACAATTTTACGTTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAGCATCGACATTCTATTCCTAGAGATAGATACAAGTCTTTCGATTTAATTGATGATTTTATAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTTCTCCCAGAGTCTCTCACTTACTAAACAGGTTTGTGTAGTTCATAATGATGTATCAGAAAGCAATGATGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCTTGCGGATGCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCATGCCATAGTGCTGAACCGATGAAAGGGGATTTTGCAGAAGATCATTCACGGAAAGATCATCCTTTCATGTTGGCCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCCAGTTCCAAGTAATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATAGAAAGTGGGATCCAGAGTATTCAGATGGAGCCTCAGAAGAAACTGGAGGATAAAGATCATAATGTCTTAATGTGCAGCTCTCCTGTCAAATTGGAGCCCTTTGGCTCATGGGATTCTTTTGGAGCTAAGACCAATTTAATATCCAGAAGTCTATTTCACCCCCAACTTCTAAGGCTAGAATCCAGATCTGAAGTGGATAGTTCTAGTCTTGCAGATGGAAGAGAGGCGGAGATATCAGAGCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATATCACAAAACAGAGACATGATGGAGGGCTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTATGGTGAAACCAAAGCTTATTTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATAGCAAGGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCGTTCTTTACAATCAATCAGCGGGGATTCTTCTGAGCTACCAGGGCATGGAAGTCAATATGGATGGCGACATGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAGCTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAATTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTCGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGTATCAGAAACAGTGAAAATATTTTACTTAGGAACGGAGCTTGAAGATCACAAGTCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCAGTAAAAGATGGACATGTTTTTCTGATGGAGCATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCCTTATTACGCAACACAGATAATAGCTTGGGGCACATTATTTCCCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAAAACCTGGTTGCACTCAGTCATCACTTGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTCGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAAAATCTTCAGAATTACATGATAAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCATATGCCTCCGTATATCCGTGCTGATGAGTTTCTCTCACAGTTTCCTTACCAGTCAGAAGCGTCATTCCGTAAGAAAATCAAGGAATATGCCAATTTGCAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTACACCAGAGCTTGTTTGTGCTTACGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACATTTAGGAATAACTGAAACACACCCCACTAATATTTCATCTGCAATGAGTCGTCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCAAGTGCAATGGTGAAAAAGAAAGCAGCTGCTAACCGTGGAGGTTCTACTGTTACCGGTACAGATGCTGATCTACGTAGATTAAGCATGGATGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGACGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCAACATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTGTCAGCTGTAAATGGTGATGAAAATGAGAGTGATTTAGAAGGGAATAGTGATCTAGATTCTTTCGCGGGAGATCTTGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGAGTACCAATGACTTAAAACGTGATAAGGGTCTTAAAATGAGAAGACACCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGACGCAGCTGAGGCTGCTGAATTATGCAGGCTGCTTATGGATGATGATGAAGCTGACAAGAAGAAAAAGAAGAAAGCTAAAGTTATTGTGGGAGAAGCTAGATTGGTACCAAAGATGCAATCCAAATTTTCCTTTGACAATGCTGAACAAGTTAAGCAAATAACAAATACATTACAATTAGATGGAACTAATCACTGGAAAGAGGATGCAATCACAGATCTTAGGGAGGAGGAAAACTTTCCCACTAAAAAAAGCAAATCACTGAAGGTCAATAAAGTCAAGAAGAATGATATTACACCTATTAGTATACCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTAAGGCTGGGCACATGAGAACGAATAAAAACTGTCCAAAATATGGTGAAGATCTAGAAACTCAACTTGAATCTACAGACATGGAAAAATCATCTGGAAAATCCAGCTTTGTGGATCCCTCTAGTCTTTCCCAGCATAAAGCTCCCTCCAAAAAGTCAATGTCTAAAGGCACAACAAAAATTGCTCCTGTTGACAATTCATCAAAAATTCCATTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAAGCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAGAAAGTGAAACCAGATGATACACAGGCTGAATCTGGTAAGCATGCTATTGTTATACGGCCTCCTACTGATTCAGGTAGAGGACAGGTTGATTCTCACAAGTTCCCTATTAAAATACGCCCGCCAACAGAAATAGATAGGGAGCAAAACCACAAAAAGATTGTTATAAAACGTACAAAGGAAGTTATTGATCTGGAACTGGACAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTCGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGAAGGTTTTAAAAAATGGAACAGTAAAGAGGACAGAAGATGGCAGGAAGAGCAAGAGAAATGGAGAAATGATGCAAGGCTTCGAGAAGAAGACAGAGCAAGAAGGCATCGCAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAGATAAAAAGATTTGAAGAAGATATTAGAAGAGAAAGGGAGGAGGAAGAACAACAAAAAGCTAAGAAGAAGAAGAAGAAGAAGCCTGAGTTAAGAGACGAGTATTTAGATGACCTCAGAGCAAGAAGACACGATAAGAGAATGCCAGAAAGAGACCGGAGTGGAAAAAGGAGATCTATTACTGAGTTAGGAAAGATTGGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCGTTGTGGACACCATTGTGAAAGATAGGTATGATCTGTCGTATCTTTTCTTGAAACCGGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGAGAGACCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGGCACGACATGTGGCAGATTACTTTTAATGCACATAAATATAACGACGGGCGAAATCCGGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGAAGCAGAAACTGGCATTGAAATTAGAGATTTCTAA 5655 0.4083 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQGCDVKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCLESKASVFDDENYDEDSEKEQDFVNDNCKVDNIPLAGEQKESFVDASKEESSLEHELHVDSPQTEELDADVQKLEEESPEVPKRSMAMPLPVLCVEDGVTILRFSEIFGIHEPLRKGEKREHRHSIPRDRYKSFDLIDDFIEEDEEEFLKGFSQSLSLTKQVCVVHNDVSESNDVDLEFPKFGFLLADASVARKDDHQSKDSCHSAEPMKGDFAEDHSRKDHPFMLANFYPLDQQDWEDEILWGNSPVPSNNNVESCEISGPELGASGGSEIEIESGIQSIQMEPQKKLEDKDHNVLMCSSPVKLEPFGSWDSFGAKTNLISRSLFHPQLLRLESRSEVDSSSLADGREAEISEHNQSGQVKRFTKVISQNRDMMEGSWLDKIIWEELDQPMVKPKLIFDLQDDQMHFEVLDSKDGTHLRLHAGAMILTRSLQSISGDSSELPGHGSQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKVSETVKIFYLGTELEDHKSLAAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEHCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDNSLGHIISLDPADKSPFLGDLKPGCTQSSLETNMYRAPVFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQNYMINRLLVHMCREFQAAEKRHMPPYIRADEFLSQFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRIWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMDAAREVLLKFNVPDEVIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDLEGNSDLDSFAGDLENLLDAEECEEGEESTNDLKRDKGLKMRRHPTLAQAEEEIEDDAAEAAELCRLLMDDDEADKKKKKKAKVIVGEARLVPKMQSKFSFDNAEQVKQITNTLQLDGTNHWKEDAITDLREEENFPTKKSKSLKVNKVKKNDITPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESTDMEKSSGKSSFVDPSSLSQHKAPSKKSMSKGTTKIAPVDNSSKIPLKFKCSSTEKSSDKPAIESLQSSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESGKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQNHKKIVIKRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTEGFKKWNSKEDRRWQEEQEKWRNDARLREEDRARRHRKEEIRMLKEQERLDEIKRFEEDIRREREEEEQQKAKKKKKKKPELRDEYLDDLRARRHDKRMPERDRSGKRRSITELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTEAETGIEIRDF* 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1691 1738 - -
Gso4g1018 1884 CDD Ubl_TAFs_like 669 740 - -
Gso4g1018 1884 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1487 1518 - -
Gso4g1018 1884 MobiDBLite consensus disorder prediction 176 200 - -
Gso4g1018 1884 CDD Bromodomain 1769 1865 - -
Gso4g1018 1884 ProSiteProfiles Bromodomain profile. 1780 1850 IPR001487 GO:0005515
Gso4g1018 1884 ProSiteProfiles Ubiquitin domain profile. 669 739 IPR000626 GO:0005515
Gso4g1018 1884 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1393 1879 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gso4g1018 1884 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1294 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gso4g1018 1884 SUPERFAMILY Bromodomain 1751 1872 IPR036427 GO:0005515
Gso4g1018 1884 SMART ubq_7 669 741 IPR000626 GO:0005515
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1 31 - -
Gso4g1018 1884 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Gso4g1018 1884 Gene3D - 1681 1882 IPR036427 GO:0005515
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1487 1561 - -
Gso4g1018 1884 ProSitePatterns Bromodomain signature. 1785 1842 IPR018359 -
Gso4g1018 1884 PANTHER BNAA01G26290D PROTEIN 15 1294 - -
Gso4g1018 1884 PANTHER BNAA01G26290D PROTEIN 1393 1879 - -
Gso4g1018 1884 MobiDBLite consensus disorder prediction 595 614 - -
Gso4g1018 1884 Pfam Ubiquitin family 671 741 IPR000626 GO:0005515
Gso4g1018 1884 Gene3D - 651 741 - -
Gso4g1018 1884 Gene3D - 22 68 IPR036741 -
Gso4g1018 1884 PRINTS Bromodomain signature 1783 1796 IPR001487 GO:0005515
Gso4g1018 1884 PRINTS Bromodomain signature 1797 1813 IPR001487 GO:0005515
Gso4g1018 1884 PRINTS Bromodomain signature 1813 1831 IPR001487 GO:0005515
Gso4g1018 1884 PRINTS Bromodomain signature 1831 1850 IPR001487 GO:0005515
Gso4g1018 1884 Pfam Protein of unknown function (DUF3591) 588 1155 IPR022591 -
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1434 1475 - -
Gso4g1018 1884 Coils Coil 1675 1714 - -
Gso4g1018 1884 Coils Coil 1266 1286 - -
Gso4g1018 1884 SUPERFAMILY Ubiquitin-like 639 739 IPR029071 -
Gso4g1018 1884 SMART bromo_6 1759 1870 IPR001487 GO:0005515
Gso4g1018 1884 MobiDBLite consensus disorder prediction 67 86 - -
Gso4g1018 1884 Pfam Bromodomain 1771 1846 IPR001487 GO:0005515
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1439 1475 - -
Gso4g1018 1884 MobiDBLite consensus disorder prediction 1526 1540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1018 Gso-Chr4 14988205 15019751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1018 669 739 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 3.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1018 K03125 - gmx:100783866 3525.33