Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1001 ATGTCCACGGCGGCTCTGCCACCCTCCGCCCCCACCGCCACCGCTGGCGGGGGCCTCGGCTACGGCATTGCCATCGCCGTGAGCATCCTGGTCCTGATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGAATCAAAGCCAACGGCAGCATCATCACTCGCCGCCACAACCACAACATCAACACTCACCAAAGAAACAACAACAATAATAACAGCAGTTTTCGTGACGCGTCGGATGGGCCTGGTGTTGTGGTCCTGGGCTTGGAGAAGCCCGCCATCGAGGCCTGCTACGGGCCCAAGATCGTGATCGGAGAGAGCAAGCGCCTGCCCAGGCCCAACGACCAGGGCCCGTGCGCGATTTGCTTGAGCGAGTATCTTCCCAAGGAGACGATACGGTGCGTTCCGGAGTGCCGCCACTGCTTCCACGCGGAGTGCGTCGACGAGTGGCTCAAGACGAGCGCCACGTGTCCCCTCTGCCGGAACTCCCCCGCGCCCTCGCCGCTGCCCGCGGCGGCCGCCACGCCGCTGTCGGAGATTGTTCCTCTGGCTTTCCACGCCAGGTGA 567 0.642 MSTAALPPSAPTATAGGGLGYGIAIAVSILVLISTIMLASYACVRIKANGSIITRRHNHNINTHQRNNNNNNSSFRDASDGPGVVVLGLEKPAIEACYGPKIVIGESKRLPRPNDQGPCAICLSEYLPKETIRCVPECRHCFHAECVDEWLKTSATCPLCRNSPAPSPLPAAAATPLSEIVPLAFHAR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1001 188 CDD RING-H2_EL5_like 119 161 - -
Gso4g1001 188 SMART ring_2 119 160 IPR001841 -
Gso4g1001 188 SUPERFAMILY RING/U-box 113 164 - -
Gso4g1001 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 167 - -
Gso4g1001 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 167 IPR013083 -
Gso4g1001 188 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 167 - -
Gso4g1001 188 Pfam Ring finger domain 119 161 IPR001841 -
Gso4g1001 188 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1001 Gso-Chr4 14533798 14534619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1001 6 188 C3H Transcription Factor Family AT5G07040 54.645 1.14e-59 182