Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0966 ATGGCTGGGATTGATGATAATGTTGGCCTTACTGGTGATTGGGGTCTTGCTAGCCCAAGTCCAAGGACCTTTTTTTCCAGAATGTTCGAAGAAGATAGTGTGACAAGATCAATCTCAGAACATTCTGGAAGTGGTAGAACTGGGGATCTCTTTTCGGGACATCGTGAGCCTAGTGAGACAGGGAAAGAAAACATGAATGATAGGGCACAAGATGGTGATTCTGGAGCCCAATTGACCGATGTGAGTTTTCAGACCGAGCAGAAGTCGAGCTCCCGGGGTGGTCTTGTTGAAAGAATGGCTGCTAGAGCCGGGTTTAATGCTCCAAGGTTGAATACAGAAAGCATTAGATCTACTGACCTTTCGCTTAATCCCGACATTCAGTCTCCGTACTTGACAATCCCGCCTGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCTTCTCCAACTACCGGAAAGTTCTTGTTCATGGCAAATGGCATCATGAGGAACTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTACACATCATCCTTTGCTTTCAAGCGTGCAACAGATTCAGGCTCTTTTTATCATGGTGCTGGAAGAAAAATGATAAATCCTACTACACTTCCTCAACAGTCCCTTCCTGGTATTGAGGTTTCGGCTCAGTCTGAAAATTCTTTTCAATCTCAAAGTGTTGATGCTGTCAAAGCTCAAACTGAGAACAAAAGTGGTTTTCGTCTTCAGGCCGACTTTGCTGAATCACCTCCTCAAAAAGATAATGGAATTAAGATGTTCTCAGCTGATCAAAGGGCTTTTGATGTTGTTGGCGGTGGCAATGAACATTCTACACCAATTGAAGAGCAAGTAGATGAAGGAGATCAAAGAGGCAATGGAGACTCAATGGCTAGTGGTGTTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTGAAGGGCAGCGAGTACCCTCGAAGTTACTACAAGTGTACACATCCAAACTGTCAAGTGAAGAAGAAAGTAGAAAGATCTCATGAGGGCCACATAACTGAGATCATCTACAAGGGAACACACAACCATCCAAAACCTCCTCCAAATCGTCGGTCAGGTATAGGTTTGGTTAACCTTCATACTGACATGCAAGTGGACCACCCTGAACATGTTGAACCACACAACGGTGGTGATGGCGACTTGGGATGGGCTAATGTACAAAAGGGAAACATAGCTGGAGCTGCTAGTTGGAAGCATGACAACCTTGAAGCCGCTTCATCAGCATCCGTTGGCCCTGAATACTGCAACCAGCAGCCCCCCAATTTGCAGACTCAAAATGGTACTCACTTTGATTCAGGAGAGGCAGTGGATGCCTCATCTACTTTTTCTAACGAAGAAGATGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCTGAGTCTAAGAGAAGGAAACTGGAATCATATGCAGAGTTGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACAAATGCAGGGTGCACAGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACGTATGAGGGAAAGCACAACCATGATGTTCCAGCTGCTCGTGCCAGCAGTCACGTCAATGCTAATGCTTCCAATGCAGTTCCTGGCCAAGCTTCTCTTCAGACCCATGTTCACAGACCTGAACCATCTGAAGTTCACAACGGCATTGGAAGGCTTGAGAGGCCTTCCCTGGGCTCATTCAACCTACCCGGGAGGCAGCAACTAGGACCTTCCCATGGCTTCTCCTTCGGTATGAACCAATCCATGCTATCAAATCTGGTGATGTCAGGGTTGGGCCATGCGCAAGCAAAGCTTCCTGTCATGCCTGTTCATTCATTCTTGGCAGCGCATCAACAACAAAACCAACAACAACGTGCGGCAAATGATTTGGGTTTCATGTTGCCAAAGGGAGAGCCAAATGTGGAGGCTATTCCTGAACGTGGTGGCCTTAACCTGTCAAATGGCTCATCAGTGTACCAAGAAATTATGAGCCGCATGCCTCTTGGACCTCATATGTAA 2265 0.457 MAGIDDNVGLTGDWGLASPSPRTFFSRMFEEDSVTRSISEHSGSGRTGDLFSGHREPSETGKENMNDRAQDGDSGAQLTDVSFQTEQKSSSRGGLVERMAARAGFNAPRLNTESIRSTDLSLNPDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMANGIMRNSELSSDAPEKCKDNGFDDIYTSSFAFKRATDSGSFYHGAGRKMINPTTLPQQSLPGIEVSAQSENSFQSQSVDAVKAQTENKSGFRLQADFAESPPQKDNGIKMFSADQRAFDVVGGGNEHSTPIEEQVDEGDQRGNGDSMASGVGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPNRRSGIGLVNLHTDMQVDHPEHVEPHNGGDGDLGWANVQKGNIAGAASWKHDNLEAASSASVGPEYCNQQPPNLQTQNGTHFDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYAELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNAVPGQASLQTHVHRPEPSEVHNGIGRLERPSLGSFNLPGRQQLGPSHGFSFGMNQSMLSNLVMSGLGHAQAKLPVMPVHSFLAAHQQQNQQQRAANDLGFMLPKGEPNVEAIPERGGLNLSNGSSVYQEIMSRMPLGPHM* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0966 754 SMART WRKY_cls 540 599 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 SMART WRKY_cls 323 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 MobiDBLite consensus disorder prediction 623 654 - -
Gso4g0966 754 ProSiteProfiles WRKY domain profile. 324 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 MobiDBLite consensus disorder prediction 70 92 - -
Gso4g0966 754 SUPERFAMILY WRKY DNA-binding domain 322 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 SUPERFAMILY WRKY DNA-binding domain 532 600 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 MobiDBLite consensus disorder prediction 34 96 - -
Gso4g0966 754 MobiDBLite consensus disorder prediction 444 511 - -
Gso4g0966 754 Pfam WRKY DNA -binding domain 541 597 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 Pfam WRKY DNA -binding domain 324 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 Gene3D WRKY domain 314 383 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 674 IPR044810 GO:0003700
Gso4g0966 754 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 106 674 - -
Gso4g0966 754 MobiDBLite consensus disorder prediction 52 69 - -
Gso4g0966 754 MobiDBLite consensus disorder prediction 290 330 - -
Gso4g0966 754 Gene3D WRKY domain 527 593 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 ProSiteProfiles WRKY domain profile. 535 600 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0966 754 MobiDBLite consensus disorder prediction 446 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0966 Gso-Chr4 12398377 12403241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0966 1 749 WRKY Transcription Factor Family AT5G56270 48.446 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g0966 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0966 K18835 - gmx:100796545 1514.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0966 4 12398377 12403241 Gso6g2642 6 48226455 48231300 GST